Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02291 ATGTTAGAGGTTAAAAAAGAGCTCAAGGATTTCAATTTTGATTCACCGCATCCAGATGGACTCCATTTAAGTCTCTCTTCTCCCAATTGCAATAGCGATACCTTTCTTCAGGAATCAACCCCAAGTTCAGGGAGAACAAAAGCACGAGCTAGACGCTGGACAGAAGAAGAGGACAACCTTTTGATTGAGAAGGTCAAGAAGCACAATGGAAGGAACTGGAAGGAAATAGCTGCATACCTCCCTGGGCGAACTGATGTCCAATGCTTGCATCGCTGGCAAAAGGTTTTAAACCCTGATCTTGTAAAGGGTTCATGGACAAAGAAGGAAGATGATTGCCTCATTGAACTGGTCAGAAAGTATGGTATGAAGAGATGGTCTGTTATTGCAAAATACTTACCAGGTCGTATTGGAAAGCAATGTCGAGAGAGGTGGCACAATCATCTTGATCCGGCTGTAAAGAAGGATGCATGGACAGAGGAGGAGGAACTAATACTTGCTTACTATCACCAAATATACGGCAGTAAGTGGGCAGAAATTGCAAGGCTTCTTCCAGGAAGGACTGACAATGCTATAAAAAATCACTGGAACTGCTCAATGAAGAAGAAATTGGATGCATCACTCTTTGGGTGTGACATAAAAGTTGCCACTTCCGGTTCCAGCGCTTCTCAAATAAAGCCAGAACCTGTTTTGGCTAAAGTCGAGGGTCAAAGTTTCAACGGAAAGGTTTCTCTAAAGCAGAGTCACTGGTTGAATCACAGTGTTGATAACTTTCTAACAAAATTGATTCTTCAAAATGATTCGGGAGAGGAATCTTGCTCTGCTTCATCCAGGGGGACTCCTAGGGCCTCAAGACAATTTTTGGATAATTCCCTGGATATGCTTGCAACCAATTTGGATTGTTTACCTCTTGCCAGTACTGATACAGATGAGGCCTGTGAATCTCCGAAACGGCAAAAGGTTTCTTTTTCAGATACAGAGTTTAACGTGGGTGATGAATCTGACAGTCCCCTTTTGAGCTACTCAAAATGGGCCAACCATGAGAAGAAAGGTCAAGCTGGAAAGGGAAGCAACAACGAAATCAACACTATGCCACATAGTGTAGATGGCATAAGTAATGAATTCAGTGAATGTCTAAGTCCAAAAACACACATGGCATGTGCAGACAATAACGATTGTACTCCCCCAACGGCTATACTCAGGATCAGGAATTACACAGGCGAGATCAGCCCAGAAACTGTGCTAAGAAACTTAGCAATGACCTATGAGAATGTTCCTTCTATTATAAGGAAAAGGACACCCAAGAAGGCAAGCTATTGTGACAGTGACCAAGCACCTTCGAGAATGATTGTCAGTTCTCCTGAAGCAGGACGTGATATTGGCTTAGATAATTTTAAACTGAACAGGGGGTTTATTCCATTCCTTCATAGACCAAATACTTCAGCCATAGCTAAATCTCTGGAAGGATGCATAGAATGA 1476 0.4255 MLEVKKELKDFNFDSPHPDGLHLSLSSPNCNSDTFLQESTPSSGRTKARARRWTEEEDNLLIEKVKKHNGRNWKEIAAYLPGRTDVQCLHRWQKVLNPDLVKGSWTKKEDDCLIELVRKYGMKRWSVIAKYLPGRIGKQCRERWHNHLDPAVKKDAWTEEEELILAYYHQIYGSKWAEIARLLPGRTDNAIKNHWNCSMKKKLDASLFGCDIKVATSGSSASQIKPEPVLAKVEGQSFNGKVSLKQSHWLNHSVDNFLTKLILQNDSGEESCSASSRGTPRASRQFLDNSLDMLATNLDCLPLASTDTDEACESPKRQKVSFSDTEFNVGDESDSPLLSYSKWANHEKKGQAGKGSNNEINTMPHSVDGISNEFSECLSPKTHMACADNNDCTPPTAILRIRNYTGEISPETVLRNLAMTYENVPSIIRKRTPKKASYCDSDQAPSRMIVSSPEAGRDIGLDNFKLNRGFIPFLHRPNTSAIAKSLEGCIE 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02291 491 FunFam Transcriptional activator Myb isoform A 102 154 - -
Pumo8g02291 491 CDD SANT 104 148 IPR001005 -
Pumo8g02291 491 Gene3D - 102 153 - -
Pumo8g02291 491 PANTHER MYB PROTEIN-RELATED 52 135 - -
Pumo8g02291 491 ProSiteProfiles Myb-like domain profile. 45 96 IPR001005 -
Pumo8g02291 491 ProSiteProfiles Myb-like domain profile. 149 199 IPR001005 -
Pumo8g02291 491 SMART sant 153 201 IPR001005 -
Pumo8g02291 491 SMART sant 101 150 IPR001005 -
Pumo8g02291 491 SMART sant 49 98 IPR001005 -
Pumo8g02291 491 Gene3D - 155 216 - -
Pumo8g02291 491 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 153 203 IPR017930 -
Pumo8g02291 491 Pfam Myb-like DNA-binding domain 102 148 IPR001005 -
Pumo8g02291 491 Pfam Myb-like DNA-binding domain 52 96 IPR001005 -
Pumo8g02291 491 Pfam Myb-like DNA-binding domain 154 196 IPR001005 -
Pumo8g02291 491 ProSiteProfiles Myb-like domain profile. 97 148 IPR001005 -
Pumo8g02291 491 CDD SANT 52 96 IPR001005 -
Pumo8g02291 491 Gene3D - 49 101 - -
Pumo8g02291 491 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 96 IPR017930 -
Pumo8g02291 491 FunFam Transcriptional activator Myb isoform A 49 101 - -
Pumo8g02291 491 SUPERFAMILY Homeodomain-like 99 195 IPR009057 -
Pumo8g02291 491 SUPERFAMILY Homeodomain-like 51 106 IPR009057 -
Pumo8g02291 491 CDD SANT 156 196 IPR001005 -
Pumo8g02291 491 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 152 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02291 Pumo-Chr8 60151595 60155187 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02291 45 207 MYB Transcription Factor Family AT5G02320 65.868 6.95e-75 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo8g02291 Myb_DNA-binding 4.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02291 - - gmx:100814774 710.679