Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02290 ATGGCGCCATTACCGGCGGAGCAAACCGGTGAATCAGCGCCGACGGAGTCGCAGAGATCCATTCCGACGCCGTTTCTGACGAAGACGTACCAGCTCGTGGATGATCCCTCCGCAGATGACCTAATTTCATGGAACGAAGATGGCACGAGCTTCATCGTTTGGCGACCCGCGGAATTCGCTCGGGATTTGCTTCCTAAGTACTTCAAACACAACAACTTTTCCAGTTTCGTCCGCCAGCTTAACACCTATGGATTTCGGAAGGTTGTCCCTGACCGTTGGGAATTCGCTAACGACTGTTTCCGGCGAGGGGAGAGAGGTCTTCTTCGCGACATACAGCGCCGGAAAATACTGCCGGTGCCGCCGACCGCGGCATCGGCAGCAGTCACAGCCAATACGGTGACGGTGGCTGTGGCGGCACCGGCGGTGAGAACGGTGTCTCCGACGACTTCCGGCGACGAACAGGTACTATCCTCGAACTCATCTCCGATTGGTGGGAATAATAATAATACAGTGTACCGCACCACAAGTTGCACCACTGCGCCCGAGCTGTTAGAAGAGAATGAAAGGCTTAGGAAAGAGAACATGCAACTGAGTCACGAGTTGAGTCAATTGAAGGGTTTGTGTAATAACATAATCTCTTTGATGACCAATTATGCTTCTGGTTTTAGCCGCCAGCAGTTAGAATCGTCCACTAGCGCTGTGAGGACCATGCCGGTACCGGAAGGGAAGGCGGCGCTGGAGCTTTTGCCCGCGAAGCATGTTTCATCGGCTGAGGACGCCGTGCATGTCGGTGGAGCTGCCGGCGCCGTGCCGTGTGCGACGGCGAACGCGGCGGAAGCAGAGGTTCCAAAGCTGTTTGGGGTTTCGATTGGACTGAAACGATGTAGGACAGAGTGCGAGGCCGAACCGGAGGGAGAAGATCAGAATCAAATGCAAACGCGAGCACAAACGCAAACACAAACACAATCGTCGCAAGAACCAGATCACGGTTCAGATGTGAAATCTGAACCGCTTGATGGCGATGACTCGGATGATCAGGATCCTCGGTGGCTGGAGCTTGGAAATAATGCTCCTTCTTAA 1080 0.5407 MAPLPAEQTGESAPTESQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERGLLRDIQRRKILPVPPTAASAAVTANTVTVAVAAPAVRTVSPTTSGDEQVLSSNSSPIGGNNNNTVYRTTSCTTAPELLEENERLRKENMQLSHELSQLKGLCNNIISLMTNYASGFSRQQLESSTSAVRTMPVPEGKAALELLPAKHVSSAEDAVHVGGAAGAVPCATANAAEAEVPKLFGVSIGLKRCRTECEAEPEGEDQNQMQTRAQTQTQTQSSQEPDHGSDVKSEPLDGDDSDDQDPRWLELGNNAPS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02290 359 FunFam Heat stress transcription factor B-4 17 115 - -
Pumo8g02290 359 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g02290 359 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 323 IPR027725 -
Pumo8g02290 359 MobiDBLite consensus disorder prediction 147 172 - -
Pumo8g02290 359 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g02290 359 Gene3D - 17 115 IPR036388 -
Pumo8g02290 359 MobiDBLite consensus disorder prediction 1 21 - -
Pumo8g02290 359 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g02290 359 MobiDBLite consensus disorder prediction 306 328 - -
Pumo8g02290 359 MobiDBLite consensus disorder prediction 301 359 - -
Pumo8g02290 359 Coils Coil 180 207 - -
Pumo8g02290 359 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g02290 359 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g02290 359 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g02290 359 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02290 Pumo-Chr8 60147207 60149676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02290 16 354 HSF AT4G11660 52.422 1.29e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo8g02290 HSF_DNA-bind 2.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02290 K09419 - gmx:100791020 561.992