Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02287 ATGACTAAAAAGATTTCATTTCTCCATGTTCTGAACCGAGTCAATACTGGACTCGCCGAGTCACCCTTTCCGAATCGGCTTTTTTCAATCTCAACAAGCACCAACATGGCCACCACAAGGTCATCGTCCGAGGACATCGTCGATTCCACGCCGCTGCTGGCCAATTCCGGCGGCTCCTCCGACGAGCTCACCTCCGGCCGTCGATTAGCGCGGCGGCAGCGGCTCCGGCAGGCGGCGCGGTTCCTCCGGCAGGCGAGCGGGCGCCGAATGATGCGGGAGCCGTCGATGCTGGTCCGGGAGGCCGCGGCGGAGCAATTGGAGGAGCGGCAGAGCGATTGGGCGTATTCGAAGCCGGTGGTTGTTCTCGACCTCGTGTGGAACTTCGCGTTCGTTGTGGTGGCGGGAACCGTGCTGGTTTTGAGCGCGAACGAAGCGCCGGGCATGCCTCTGAGGTTGTGGATTGTAGGGTACGCTATGCAATGTGTCCTTCACATGGTTTGCGTTTGCGTCGAGTATAGGAGGCGGAGGAGGCAGCAACGCGCCACTGCGTCATCGTTGAACTCTGTTTCAGTGCAAGACAGGGTTGGGAGCAGCAGTGGGAATTTGAGTGTCTCTTCCAGGGAGGGTTCTGCTTCTGGTTCTGCGCAGTATGTGTCATTGGGGCAACTCGACGAGGAGGGTACTAGTGCTGCAAAGCATTTGGAATCAGCCAATACAATGTTTTCATTTGTTTGGTGGATTATTGGATTCTACTGGGTATCAGCTGGGGGTCAAGCATTAGCCCAAGACTCTCCTCAGCTTTACTGGCTATGTATAATCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCACTGGCGTGTATCATTGGAATTGCTGTTTGCTGTTGCCTTCCATGTATCATTGCACTTCTATATGCAGTTGCAGACCAGGAAGGGGCATCAAAGGAAGACATTGAGCAGTTGTCAAAATTTAAATTCCGAAGAATTGAAAGCAATGAGAAACTTACCGGTACTATACAAGGACCTATTGGAGGAATAATGACCGAATGCCAGGCTGATTCACCTATCGAACATGTTCTTGCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTCTTCTTATGACGATGGGGTTGAGCTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGTCTGTGTGGATAAATGGCTATATATTAATGCTACATGCCCCCTCTGCAAGTATAACATCTTAAAAAGTAGCAACCTCAGTCAAGAGGAAGTGTAG 1278 0.5117 MTKKISFLHVLNRVNTGLAESPFPNRLFSISTSTNMATTRSSSEDIVDSTPLLANSGGSSDELTSGRRLARRQRLRQAARFLRQASGRRMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDLVWNFAFVVVAGTVLVLSANEAPGMPLRLWIVGYAMQCVLHMVCVCVEYRRRRRQQRATASSLNSVSVQDRVGSSSGNLSVSSREGSASGSAQYVSLGQLDEEGTSAAKHLESANTMFSFVWWIIGFYWVSAGGQALAQDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRIESNEKLTGTIQGPIGGIMTECQADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCVCVDKWLYINATCPLCKYNILKSSNLSQEEV 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02287 425 Pfam Ring finger domain 369 411 IPR001841 -
Pumo8g02287 425 ProSiteProfiles Zinc finger RING-type profile. 370 411 IPR001841 -
Pumo8g02287 425 PANTHER TARGET OF ERK KINASE MPK-1 84 416 - -
Pumo8g02287 425 FunFam E3 ubiquitin-protein ligase At1g12760 356 421 - -
Pumo8g02287 425 CDD RING-H2_RNF6-like 369 411 - -
Pumo8g02287 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 356 424 IPR013083 -
Pumo8g02287 425 SUPERFAMILY RING/U-box 360 417 - -
Pumo8g02287 425 SMART ring_2 370 410 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02287 Pumo-Chr8 60119342 60136218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02287 49 418 C3H Transcription Factor Family AT1G68070 48.257 1.53e-116 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02287 - - gmx:100790497 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01559 4 19672776 19677763 Pumo8g02287 8 60119342 60136218 PCT