Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02277 ATGGCCCCGTCACCTTCATCACCATCTTCAAAGAGGCACCCACTGTACCACGGTATCCGTTGCCGCGGAAGGAAGTGGGTCTCCGAAATCCGCGAGCCACGCAAGACCTCCCGCATATGGCTCGGCACCTTCCCCACGCCGGAGATGGCCGCCGCCGCCTATGACGTCGCCGCGTTGGCCCTCAAAGGCGACGGTGCCGCTCTCAACCTCCCTCACTCAGTTGCCAAGTATCAAATGCCTTTAACCAACTCTCCTGCGGATATTCGCAGTGCTGCCTCTGCTGCAGCCGCAATGATAAAGGCCGAAACTCAAACTCAAACTCAAACTCAAGCTACCCACAACAATGCATCAATAACTGAAGAAGCTGCCTACACTGCTTCAGCTTCGTGCTTTGAAACTGATTTCATGGACGAGGAAGCCATATTCGGCATGCCAAGTTTGTTGCTGGACATGGCCGGGGGAATGCTTCTGTCGCCGCCCAGAATGTGCCCACCACCGTCCGATAACTCGCCTGAGAAGCAAGGTGCAGAAACTTTGTGGAGTTTTTTTTGA 552 0.5489 MAPSPSSPSSKRHPLYHGIRCRGRKWVSEIREPRKTSRIWLGTFPTPEMAAAAYDVAALALKGDGAALNLPHSVAKYQMPLTNSPADIRSAASAAAAMIKAETQTQTQTQATHNNASITEEAAYTASASCFETDFMDEEAIFGMPSLLLDMAGGMLLSPPRMCPPPSDNSPEKQGAETLWSFF 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02277 183 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Pumo8g02277 183 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 181 IPR045277 GO:0003700
Pumo8g02277 183 ProSiteProfiles AP2/ERF domain profile. 15 71 IPR001471 GO:0003700|GO:0006355
Pumo8g02277 183 SUPERFAMILY DNA-binding domain 15 73 IPR016177 GO:0003677
Pumo8g02277 183 SMART rav1_2 15 77 IPR001471 GO:0003700|GO:0006355
Pumo8g02277 183 Pfam AP2 domain 15 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02277 Pumo-Chr8 60004998 60005706 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02277 10 182 AP2-EREBP Transcription Factor Family AT5G52020 53.714 1.45e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo8g02277 AP2 3.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02277 - - gmx:100811020 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02277 8 60004998 60005706 Pumo8g02277 8 60004998 60005706 ECH
Pumo4g01570 4 19808790 19810286 Pumo8g02277 8 60004998 60005706 PCT