Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02275 ATGAACATTTTCAAATCTCCACTCGACCATGAGTTGAACTGTGGAATATTCCACGAGTCAGAAGCATCTTATTCCTCGGAAACAAGGAGCGCCCACTCAGACGAAGAAGTGATTCTAGCTTCAGCGCGGCCAAAGAAGCGAGCGGGGCGAAGAGTATTCAAGGAGACGAGGCACCCCGTGTACCGAGGAGTGCGTCGCAGGAACAAGAACAAGTGGGTCTGCGAGATGCGAGTTCCCAACAACAACTCACGAATTTGGCTCGGGACATACCCAACGCCCGAAATGGCGGCACGTGCACACGACGTTGCCGCGCTGGCGCTCAGGGGAAAGTCTGCGTGCCTCAATTTCGCCGACTCCGTGTGGCGGCTGACGGTGCCGGCCACCACCGACGCGGTGGAGATACGGCGAGCGGCGGGGGAGGCTGCTGAGGCATTTGCAGCTGAGGACGTTAATGAACAACACCACCAACAGGAGAGTGTGATGGCTACAAGTGTTGATGAAGTTCAAGAAGAGCCTCTGCAACAAGAGGGGATGTATGTGGACGAAGTTCAAGACTTGCATGATTTGCTTTTGAACATTGCGAATGAACCTTTGATGTCTCCTCCTCCCTGTGCAAGAGATGGTAGGGACTGGAATGACGTGGAGATATTTGATGATGAAGTCTCCTTATGGAACTTTTCAATTTGA 687 0.5284 MNIFKSPLDHELNCGIFHESEASYSSETRSAHSDEEVILASARPKKRAGRRVFKETRHPVYRGVRRRNKNKWVCEMRVPNNNSRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSVWRLTVPATTDAVEIRRAAGEAAEAFAAEDVNEQHHQQESVMATSVDEVQEEPLQQEGMYVDEVQDLHDLLLNIANEPLMSPPPCARDGRDWNDVEIFDDEVSLWNFSI 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02275 228 Gene3D AP2/ERF domain 60 118 IPR036955 GO:0003700|GO:0006355
Pumo8g02275 228 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Pumo8g02275 228 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Pumo8g02275 228 Pfam AP2 domain 59 109 IPR001471 GO:0003700|GO:0006355
Pumo8g02275 228 FunFam Ethylene-responsive transcription factor 2 59 118 - -
Pumo8g02275 228 CDD AP2 61 119 IPR001471 GO:0003700|GO:0006355
Pumo8g02275 228 ProSiteProfiles AP2/ERF domain profile. 60 117 IPR001471 GO:0003700|GO:0006355
Pumo8g02275 228 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 20 225 IPR045277 GO:0003700
Pumo8g02275 228 SMART rav1_2 60 123 IPR001471 GO:0003700|GO:0006355
Pumo8g02275 228 SUPERFAMILY DNA-binding domain 60 119 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02275 Pumo-Chr8 59971859 59973037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02275 34 226 AP2-EREBP Transcription Factor Family AT1G63030 49.231 1.45e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo8g02275 AP2 3.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02275 - - gmx:100789097 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02275 8 59971859 59973037 Pumo8g02275 8 59971859 59973037 ECH
Pumo4g01571 4 19836594 19837790 Pumo8g02275 8 59971859 59973037 PCT