Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02266 ATGCAAGAACCAAGCTTGGGAATGATGGGTGAGGTCTCCGGCGATCACCACCGTCAGCTGAAGGCGGAGATAGCGACTCATCCGCTGTACGAGCAGCTTCTGGCTGCACACGTGGCATGCCTCCGTGTGGCCACTCCCATCGATCAACTACCACTCATCGATGCTCAGTTATCACAGTCTCACCATCTTCTACGCTCTTATGTCTCACACAACACTCATTCTCTCTCCCCTCATGACCGCCAAGAGCTTGACAACTTGCTGGCACAATACTTGATAGTTTTGTGTACTTTCAAAGAGCAGCTTCAGCAACATGTCAGAGTCCACGCCGTCGAGGCTGTCATGGCTTGCCGTGATATCGAAAATACCTTACAAGCTCTCACAGGAGTGAGTTTGGGAGAAGGAACTGGTGCGACAATGTCAGATGATGAAGATGATTTACCAATGGATTTTTCTTTAGATCAATCTAGCGCTGAAGGGCATGACATGATGGGATTTGGTCCGTTACTTCCTACAGAATCTGAAAGGTCACTGATGGAAAGAGTTCGTCAGGAACTAAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTCAGGGAAGAAATATTAAGGAAACGTAGAGCTGGGAAATTGCCAGGTGACACAACTTCCGTGTTAAAGAACTGGTGGCAGCAACATGCGAAGTGGCCTTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATTAATAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCGGTTACCTCATTGAAGTCCAAGCGCAAGAGGTAG 846 0.474 MQEPSLGMMGEVSGDHHRQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPLIDAQLSQSHHLLRSYVSHNTHSLSPHDRQELDNLLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGTGATMSDDEDDLPMDFSLDQSSAEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02266 281 Pfam KNOX1 domain 20 61 IPR005540 GO:0003677|GO:0005634
Pumo8g02266 281 FunFam homeobox protein knotted-1-like 3 isoform X1 205 266 - -
Pumo8g02266 281 ProSiteProfiles ELK domain profile. 184 204 IPR005539 GO:0003677
Pumo8g02266 281 Pfam KNOX2 domain 76 127 IPR005541 GO:0003677|GO:0005634
Pumo8g02266 281 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 61 268 - -
Pumo8g02266 281 ProSiteProfiles 'Homeobox' domain profile. 204 267 IPR001356 GO:0003677
Pumo8g02266 281 SMART KNOX2_2 73 128 IPR005541 GO:0003677|GO:0005634
Pumo8g02266 281 SMART HOX_1 206 271 IPR001356 GO:0003677
Pumo8g02266 281 CDD homeodomain 207 268 IPR001356 GO:0003677
Pumo8g02266 281 Gene3D - 203 277 - -
Pumo8g02266 281 Pfam Homeobox KN domain 224 263 IPR008422 GO:0003677|GO:0006355
Pumo8g02266 281 SUPERFAMILY Homeodomain-like 206 271 IPR009057 -
Pumo8g02266 281 SMART KNOX1_2 18 62 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02266 Pumo-Chr8 59799013 59805357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02266 1 280 Homeobox Transcription Factor Family AT1G62990 80.137 4.65e-174 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pumo8g02266 KNOX2 1.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02266 - - gmx:100808872 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02266 8 59799013 59805357 Pumo8g02266 8 59799013 59805357 ECH
Pumo4g01579 4 19971932 19977455 Pumo8g02266 8 59799013 59805357 PCT