Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02261 ATGGCTAGCAAATTGGCCTTCACACTGACTTACCCGCGTCCATTCACTGCTCCTACACCAATCTCTTCCTTGTCCTCCACTTCTGCTTCTCGACTCCACCTTGTTCAATTCAATGGCCGCCACCTATGCCTTCGCCGCCGGCTATTTGTGTTTTCCCCCAAGGCCACCGCCGATCAAGACAAGGTTGAGGAAGACGCCGTTGTTGATGGTAAAATCCTACAATATTGTAGCATAGACAAAAAAGAGAAGAAATCAATTGGTGAAATGGAGCAAGAATTTCTTCAAGCACTGCAAGCATTCTATTATGAGGGGAAGGCTATTATGTCAAATGAGGAATTTGATAATCTTAAGGAAGAACTCATGTGGGAAGGGAGCACCGTTGTGATGCTAAGTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAAAACCAATCATGAGCGACAAAGAGTTTGATGAGTTGAAACTCAGGCTAAAGATAGAAGGGAGCGAAATTGTGGCCGAGGGTCCACGGTGCAGTCTTCGTAGTAGAAAGGTTTACAGTGACCTGTCTGTTGACTATTTAAAGATGTTCCTGCTGAACGTCCCAGCGACTGTGATTGCACTTGGATTGTTCTTCTTCCTTGATGATGTGACTGGATTTGAGATATCATATCTGATAAAGATTCCAGAGCCTTTTAGTTTCATTTTAACTTGGTTTGCCGCTATTCCCTTTATTTTGTGGCTGGCTCAATCAATTACAAGGGCAATTGTACAAGATTTTTTGATTTTAAAGCTATCATCAGCTATTCAAAACTTAACCATGGCCTCCAATATTCTTCAAGCTTGTACCTTGTTGCTTGCTTTTACAATGATGTTCACGTTCATGGGAGAACGAGCAGTAGCTGGGGGAATATTTCGACCCAGTCAATGGGCTCTTGCCCATGCCACCTTTTATGGTGATGAGACTGCTTCTGCCACTATGGGAGGAGCATGCGGGTACGGGAATTTATTTCAAAATGGTTACGGGACAGATACGGTGGCTTTAAGTTCGACCTTGTTCAACAATGGTTACGTGTGTGGGACTTGTTATCAGATAAAATGCTACCAATCCAGTGCATGTTACAAAAATGTGGCTTTCACCACAGTCACTGCCACCAATCTTTGCCCTCCTAATTGGTCTCAACCCTCCAATAATGGTGGCTGGTGCAATCCACCACGAGTGCATTTTGACATGTCCAAGCCCGCCTTCATGAAAATTGCGCAGTGGAAGGCTGGCATCGTCCCAGTTATGTACCGCAGAGTGCCATGCATAAGGAAGGGAGGGCTTCGATTCTCTTTCCAAGGAAATGGGTACTGGCTATTGGTATACGTGATGAACGTGGGAGGTGGAGGAGATATTTCAAGCATGTCGGTGAAAGGAAGCAGAACTGGATGGATTAGCATGAGCCACAACTGGGGGGCTTCTTATCAAGCATTTGCAACTTTGGGTGGCCAAGCTCTTTCTTTCAGGATTACTTCATACACCACCAGGGAGACTATTATTGCATGGAATGTTGCTCCTTCCAATTGGAACGTCGGACTAACTTATTCCACCAACGTTAACTTCCGCTAA 1608 0.4478 MASKLAFTLTYPRPFTAPTPISSLSSTSASRLHLVQFNGRHLCLRRRLFVFSPKATADQDKVEEDAVVDGKILQYCSIDKKEKKSIGEMEQEFLQALQAFYYEGKAIMSNEEFDNLKEELMWEGSTVVMLSSDEQKFLEASMAYVSGKPIMSDKEFDELKLRLKIEGSEIVAEGPRCSLRSRKVYSDLSVDYLKMFLLNVPATVIALGLFFFLDDVTGFEISYLIKIPEPFSFILTWFAAIPFILWLAQSITRAIVQDFLILKLSSAIQNLTMASNILQACTLLLAFTMMFTFMGERAVAGGIFRPSQWALAHATFYGDETASATMGGACGYGNLFQNGYGTDTVALSSTLFNNGYVCGTCYQIKCYQSSACYKNVAFTTVTATNLCPPNWSQPSNNGGWCNPPRVHFDMSKPAFMKIAQWKAGIVPVMYRRVPCIRKGGLRFSFQGNGYWLLVYVMNVGGGGDISSMSVKGSRTGWISMSHNWGASYQAFATLGGQALSFRITSYTTRETIIAWNVAPSNWNVGLTYSTNVNFR 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02261 535 CDD DPBB_EXPA_N 308 435 - -
Pumo8g02261 535 PRINTS Expansin signature 415 428 IPR002963 GO:0009664
Pumo8g02261 535 PRINTS Expansin signature 398 415 IPR002963 GO:0009664
Pumo8g02261 535 PRINTS Expansin signature 339 353 IPR002963 GO:0009664
Pumo8g02261 535 PRINTS Expansin signature 439 451 IPR002963 GO:0009664
Pumo8g02261 535 PRINTS Expansin signature 516 532 IPR002963 GO:0009664
Pumo8g02261 535 PRINTS Expansin signature 379 389 IPR002963 GO:0009664
Pumo8g02261 535 PRINTS Expansin signature 451 472 IPR002963 GO:0009664
Pumo8g02261 535 Pfam Lytic transglycolase 344 430 IPR009009 -
Pumo8g02261 535 PRINTS Expansin/Lol pI family signature 308 323 IPR007118 GO:0005576
Pumo8g02261 535 PRINTS Expansin/Lol pI family signature 348 366 IPR007118 GO:0005576
Pumo8g02261 535 PRINTS Expansin/Lol pI family signature 477 491 IPR007118 GO:0005576
Pumo8g02261 535 PRINTS Expansin/Lol pI family signature 516 530 IPR007118 GO:0005576
Pumo8g02261 535 PRINTS Expansin/Lol pI family signature 326 344 IPR007118 GO:0005576
Pumo8g02261 535 PRINTS Expansin/Lol pI family signature 423 439 IPR007118 GO:0005576
Pumo8g02261 535 Pfam Expansin C-terminal domain 442 519 IPR007117 -
Pumo8g02261 535 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 450 530 IPR007117 -
Pumo8g02261 535 SMART dpbb_1 344 430 IPR007112 -
Pumo8g02261 535 SUPERFAMILY PHL pollen allergen 437 529 IPR036749 -
Pumo8g02261 535 Gene3D - 300 435 IPR036908 -
Pumo8g02261 535 SUPERFAMILY Barwin-like endoglucanases 308 458 IPR036908 -
Pumo8g02261 535 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 327 440 IPR007112 -
Pumo8g02261 535 PANTHER PGR5-LIKE PROTEIN 1B, CHLOROPLASTIC 13 263 IPR039987 GO:0009535|GO:0009773|GO:0016730
Pumo8g02261 535 Gene3D - 441 535 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02261 Pumo-Chr8 59740076 59747591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02261 289 535 Expansin Gene Family AT1G12560 69.231 1.90e-126 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02261 - - gmx:100807807 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02261 8 59740076 59747591 Pumo8g02261 8 59740076 59747591 ECH
Pumo4g01583 4 20071565 20072783 Pumo8g02261 8 59740076 59747591 PCT