Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02253 ATGAGAAGACACCGTGAAATTCATCTCTCTCATGCTCTATTCTGCACCGTTTTCTGTTTGCTTGTGACAGCTTCTGCAGCAACTGAGAAGGAAATTTTGCTTGAATTTAAGGGTAACATCACGGACGATCCACGCGCCAGCTTGAGTTCGTGGGTTTCAAGTGGAAACCCGTGCCATGATTACAAGGGTGTTTTTTGTAACTCTGAAGGGCTTGTGGAGAGGATTGTGCTTTGGAACACTAGCTTGGGAGGGGTGTTGTCCTCTTCACTTTCAGGGTTGAAGAGGTTGAGGACATTGACCTTGTTCGGGAACCGTTTCTCGGGTGGTATTCCAGAAGGGTATGGTGATCTTCACTCGCTTTGGAAGATCAATTTGAGTTCCAATGCTTTATCTGGTTCGATCCCTGAGTTCATTGGTGATTTGCCTAGCATTCGGTTTCTAGATTTATCCAAGAATGGCTTCACTGGGGAGATACCTTCGGCTTTGTTTAGGTACTGCTACAAAACCAAGTTCGTTTCTCTTTCTCATAACAACCTTGCTGGTTCAATTCCTGCCTCCTTGGTGAATTGCTCCAACCTTGAAGGGTTTGATTTTTCCTTCAACAACCTTAGTGGGGTTGTCCCTTCGCGCCTTTGTGACATTCCAAGGTTGTCATATGTGTCGCTGAGAAGCAATGCCTTGTCAGGGAGCCTGCAGGAGCTCATTTCCTCATGCCAAAGTCTGGTACATTTGGATTTTGGTAGTAATAGGTTCACTGATTTGGCTCCATTCCGCGTCCTTGAAATGCAAAATCTTACCTATCTCAATCTATCGTATAATGGGTTTGGAGGACATATTCCTGAGATCAGTGCCTGTAGTGGGAGATTGGAAATCTTTGATGCTTCAGGGAATTCTTTGGATGGGGAGATTCCCCCCAGCATCACTAAATGCAAGAGCCTAAAGCTCTTGGCGTTGGAGTTGAATAGACTGGAGGGGAATATCCCAGTGGATATTCAGGAATTGCGGGGACTAATAGTCATCAAATTGGGTAATAATTCCATTGGTGGAATGATTCCCAAGGGCTTTGGCAACGTTGAGCTGCTTGAATTGCTGGATTTGCACAACCTAAACCTCATTGGCCAAATTCCTGATGATATAAGCAATTGCAAGTTTCTTCTTGGGCTGGATGTTTCTGGTAATAAATTAGAAGGAGAGATTCCTCAGACTCTTTACAACTTGACAAACCTGGAATCCCTTAACCTACATCATAACCAGCTTAATGGAAGCATTCCCCTAAGCCTAGGAAACCTGTCAAAGATCCAATACCTAGATCTGTCACATAATTCACTTTCTGGCTCAATCCCTACTTCCCTTGGAAATTTAAATAACTTGACACATTTTGATCTCTCATTCAATAATCTCTCTGGTGCCATTCCTCCTGTTGCAACCATACAGCGTTTTGGTGCATCTGCATTTTCCGATAATCCTTTTCTCTGTGGTCCTCCTTTGGACACTCCTTGCACGGTAAACGGAACTAGTTCACCTTCAGCTCCTAGGAAGGCTAAAGTTCTAAGCACCTCAGCAATTGTTGCAATTGTTGCTGCAGCTCTAATTCTCACTGGGGTTTGTTTGGTGACCATCATGAATATGAGGGCGCGTGGTAGAAGAAAAGATGATGATCAGATTATGATTGTTGAGAGCACACCTCCTGGATCAACAGAATCAAATGTTATAATTGGAAAGCTGGTTCTCTTCAGCAAAAGTTTACCATCAAAATATGAAGATTGGGAGGCAGGTACGAAAGCATTGCTTGACAAAGAGTCTTTGATAGGTGGTGGATCAATTGGTACAGTCTACCGAACTGATTTTGAAGGCGGCATCTCAATTGCAGTGAAGAAGCTTGAGACTCTGGGAAGGATCAGAAACCAGGAGGAATTCGAGCATGAAATTGGGCGACTAGGCAACCTTCAACACCCTCATTTAGTTGCTTTTCAAGGTTACTATTGGTCCTCTTCAATGCAGTTGATTCTATCAGAGTTTGTCCCAAATGGAAATCTGTATGATAATCTACATGGGTTTGGCTATCCTGGAACCAGCACTAGTAGAGGCAATAGGGAATTATATTGGTCTAGAAGGTTCCAAATTGCTGTGGGAACTGCAAGAGCCCTTGCTTATCTCCACCATGACTGCAGACCTCCAATTCTTCATCTCAACATTAAATCCTCTAACATACTCCTAGATGACAAGTATGAAGCTAAATTGTCTGATTATGGATTAGGAAAGTTACTTCCCATTTTGGATAATTATGGTCTGACCAAATTCCACAATGCTGTGGGATATGTTGCACCAGAGTTGGCTCAAGGCCTGAGGCAGAGTGAGAAGTGTGATGTTTACAGTTTTGGAGTCATTCTTTTGGAGTTGGTTACAGGGAGGAAGCCTGTGGAAAGTCCAACCGCAAATGAGGTGGTGGTTCTGTGTGAATATGTAAGAGGTTTGTTGGAGACTGGCTCAGCTTCAGATTGCTTTGACAGAAATTTACTGGGCTTTGCTGAGAACGAATTAATTCAGGTTATGAGATTGGGGCTAATTTGTACTTCGGAAGATCCTTTAAGGAGACCAAGCATGGCTGAGGTTATCCAGGTCCTTGAGTCCATTAGAAATGGATTGGAATCCCATTAA 2658 0.4338 MRRHREIHLSHALFCTVFCLLVTASAATEKEILLEFKGNITDDPRASLSSWVSSGNPCHDYKGVFCNSEGLVERIVLWNTSLGGVLSSSLSGLKRLRTLTLFGNRFSGGIPEGYGDLHSLWKINLSSNALSGSIPEFIGDLPSIRFLDLSKNGFTGEIPSALFRYCYKTKFVSLSHNNLAGSIPASLVNCSNLEGFDFSFNNLSGVVPSRLCDIPRLSYVSLRSNALSGSLQELISSCQSLVHLDFGSNRFTDLAPFRVLEMQNLTYLNLSYNGFGGHIPEISACSGRLEIFDASGNSLDGEIPPSITKCKSLKLLALELNRLEGNIPVDIQELRGLIVIKLGNNSIGGMIPKGFGNVELLELLDLHNLNLIGQIPDDISNCKFLLGLDVSGNKLEGEIPQTLYNLTNLESLNLHHNQLNGSIPLSLGNLSKIQYLDLSHNSLSGSIPTSLGNLNNLTHFDLSFNNLSGAIPPVATIQRFGASAFSDNPFLCGPPLDTPCTVNGTSSPSAPRKAKVLSTSAIVAIVAAALILTGVCLVTIMNMRARGRRKDDDQIMIVESTPPGSTESNVIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYRTDFEGGISIAVKKLETLGRIRNQEEFEHEIGRLGNLQHPHLVAFQGYYWSSSMQLILSEFVPNGNLYDNLHGFGYPGTSTSRGNRELYWSRRFQIAVGTARALAYLHHDCRPPILHLNIKSSNILLDDKYEAKLSDYGLGKLLPILDNYGLTKFHNAVGYVAPELAQGLRQSEKCDVYSFGVILLELVTGRKPVESPTANEVVVLCEYVRGLLETGSASDCFDRNLLGFAENELIQVMRLGLICTSEDPLRRPSMAEVIQVLESIRNGLESH 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02253 885 ProSiteProfiles Protein kinase domain profile. 597 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g02253 885 Gene3D Phosphorylase Kinase; domain 1 597 677 - -
Pumo8g02253 885 ProSiteProfiles Leucine-rich repeat profile. 408 431 IPR001611 GO:0005515
Pumo8g02253 885 Gene3D Transferase(Phosphotransferase) domain 1 678 884 - -
Pumo8g02253 885 SUPERFAMILY L domain-like 164 496 - -
Pumo8g02253 885 Pfam Protein kinase domain 599 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g02253 885 CDD STKc_IRAK 603 878 - -
Pumo8g02253 885 Gene3D Ribonuclease Inhibitor 25 167 IPR032675 -
Pumo8g02253 885 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 674 884 - -
Pumo8g02253 885 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Pumo8g02253 885 FunFam Putative LRR receptor-like serine/threonine-protein kinase 213 510 - -
Pumo8g02253 885 Gene3D Ribonuclease Inhibitor 168 507 IPR032675 -
Pumo8g02253 885 PANTHER OS05G0588300 PROTEIN 205 332 - -
Pumo8g02253 885 Pfam Leucine Rich repeat 263 276 IPR001611 GO:0005515
Pumo8g02253 885 Pfam Leucine Rich Repeat 432 454 IPR001611 GO:0005515
Pumo8g02253 885 SUPERFAMILY Protein kinase-like (PK-like) 598 876 IPR011009 -
Pumo8g02253 885 SMART LRR_typ_2 358 382 IPR003591 -
Pumo8g02253 885 SMART LRR_typ_2 262 285 IPR003591 -
Pumo8g02253 885 SMART LRR_typ_2 141 165 IPR003591 -
Pumo8g02253 885 SMART LRR_typ_2 454 478 IPR003591 -
Pumo8g02253 885 SMART LRR_typ_2 406 429 IPR003591 -
Pumo8g02253 885 SMART LRR_typ_2 430 453 IPR003591 -
Pumo8g02253 885 SUPERFAMILY L domain-like 73 161 - -
Pumo8g02253 885 FunFam Putative LRR receptor-like serine/threonine-protein kinase 574 673 - -
Pumo8g02253 885 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 26 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02253 Pumo-Chr8 59668377 59672349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02253 25 884 Receptor kinase-like Gene Family AT1G62950 65.823 0.0 1106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Pumo8g02253 Pkinase 9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02253 - - gmx:100805681 1604.73