Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02248 ATGGATCCTATTACAGCACACGGGCATTCTCTTCCCCCTCCTTTCCACCTCCACAACCAACAGCAACACCAGTTCCACTCCTTACAACAAGAAGACGAGCAAAGCGGAAGCAGCGGAGGCCTTAACCTCGCGCAGAAAAGGGAACGCGATGAAAACAACAACAGTGAAGGAAAAGAAGGAGGTGGCTCCGGCGAAACCGAGATTTCAAGAAGACCCCGAGGAAGACCCTCCGGATCCAAGAACAAACCCAAACCCCCCATCATCATCACCCGCGACAGCGCCAACGCCCTCAAAACGCATGTCATGGAGGTCGCCGACGGCTGCGACATCGTCGAGAGCGTCTCCACCTTCGCGCGCCGCCGCCAGAGAGGGGTTTGCATCATGAACGGCACCGGAACCGTCACCAACGTCACCCTAAGGCAACCCGCTTCCTCCGGCGCCGTCGTCACTCTTCACGGAAGGTTCGAGATCTTGTCCCTGGCCGGATCCTTCCTGCCACCGCCGGCGCCGCCCGCAGCCTCCGGTTTGACCATATACCTCGCCGGAGGACAAGGCCAGGTGGTAGGAGGAAGCGTGGTTGGCGCGCTCATTGCTTCGGGTCCCGTGGTTATCATGTCAGCTTCGTTTAGCAACGCTGCGTACGAGAGGCTTCCGTTGGAAGACGAGGACCCTTCGATGGCGCTTCAAGGAGGAGGTTCGATTGGGTCACCAGGCGGTGGCGGTGGCGTTGGTCAAGCGCAGGCACCTCAGCAGCTTATGGGGGAGTCCACTACTACTGCGCCTCTATTTCATGGGTTGAATCCGAATCTTCTGAATTCGGTTCAGATGCCGTCGGAGACCTTCTGGGCAACGGGTCGCTCTCCTTACTGA 870 0.5862 MDPITAHGHSLPPPFHLHNQQQHQFHSLQQEDEQSGSSGGLNLAQKRERDENNNSEGKEGGGSGETEISRRPRGRPSGSKNKPKPPIIITRDSANALKTHVMEVADGCDIVESVSTFARRRQRGVCIMNGTGTVTNVTLRQPASSGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEDEDPSMALQGGGSIGSPGGGGGVGQAQAPQQLMGESTTTAPLFHGLNPNLLNSVQMPSETFWATGRSPY 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02248 289 PIRSF ESCAROLA 14 288 IPR014476 GO:0003680
Pumo8g02248 289 Gene3D - 97 226 - -
Pumo8g02248 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 31 283 IPR014476 GO:0003680
Pumo8g02248 289 MobiDBLite consensus disorder prediction 223 249 - -
Pumo8g02248 289 MobiDBLite consensus disorder prediction 15 42 - -
Pumo8g02248 289 SUPERFAMILY AF0104/ALDC/Ptd012-like 94 223 - -
Pumo8g02248 289 Pfam Plants and Prokaryotes Conserved (PCC) domain 98 211 IPR005175 -
Pumo8g02248 289 FunFam AT-hook motif nuclear-localized protein 97 224 - -
Pumo8g02248 289 CDD DUF296 98 165 IPR005175 -
Pumo8g02248 289 ProSiteProfiles PPC domain profile profile. 94 231 IPR005175 -
Pumo8g02248 289 MobiDBLite consensus disorder prediction 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02248 Pumo-Chr8 59602251 59603169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02248 1 289 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 52.924 1.24e-81 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02248 - - gmx:100802044 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02248 8 59602251 59603169 Pumo8g02248 8 59602251 59603169 ECH