Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02234 ATGTCATCAAACTTAAGGATAAGGAAGGGTCGACGAAAGATTGAGATGAAGAAGATGACAAACCAAAGCAACCTCCAAGTGACCTTCTCGAAGCGACGTAGTGGGGTTTTCAAAAAAGCTAGCGAGCTTTGCACCCTTTGTGACGCTGAGGTTTGTCTTATCATCTTCTCGCCAAGTGAAAAGGTCTTCTCTTTTGGTCATCCCAATGTTGACACAGTGGTACATCGCTACCTTATAGAGGCCACACCACATGACACACAATTCATGGGAGTCAACCTGCACGAACTCAATTTGCAACTCACCAAGTTCACCAGCCAACTTGAAATTGAGAAGAAACGTGCTAATGAGTTGAAACGATTGCAGAAGGTCATTCAAACTCAATGGTGGTGGACAACTCCTATTAATGAGATGACCATTTCACAATTGAACGAGTTTAAGGGGGCATTACAACAAATGAAGATGAACATCACTCGCCGATCTGAAATGATTCTCATTCATAATGCTATTAACCCCACTTTATTTTTTGCAAACAATAAGTCTTCTAACCCAGTGCCATCGATGAATAATCATGGATTAGGAGAGATTGGGAATCAAATGAATCACCCTGACTTTATCAACATGAGAGGACATGGTCCTAACAATGGCTTTTATTGA 654 0.4128 MSSNLRIRKGRRKIEMKKMTNQSNLQVTFSKRRSGVFKKASELCTLCDAEVCLIIFSPSEKVFSFGHPNVDTVVHRYLIEATPHDTQFMGVNLHELNLQLTKFTSQLEIEKKRANELKRLQKVIQTQWWWTTPINEMTISQLNEFKGALQQMKMNITRRSEMILIHNAINPTLFFANNKSSNPVPSMNNHGLGEIGNQMNHPDFINMRGHGPNNGFY 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02234 217 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Pumo8g02234 217 SUPERFAMILY SRF-like 10 80 IPR036879 GO:0003677|GO:0046983
Pumo8g02234 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Pumo8g02234 217 Gene3D - 91 170 - -
Pumo8g02234 217 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Pumo8g02234 217 Coils Coil 93 120 - -
Pumo8g02234 217 Gene3D - 21 87 IPR036879 GO:0003677|GO:0046983
Pumo8g02234 217 PANTHER MADS BOX PROTEIN 11 159 - -
Pumo8g02234 217 CDD MADS_MEF2_like 10 78 IPR033896 GO:0000977|GO:0045944
Pumo8g02234 217 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Pumo8g02234 217 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Pumo8g02234 217 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Pumo8g02234 217 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02234 Pumo-Chr8 59474221 59474947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02234 9 182 Type I MADS-box Gene Family AT5G60440 48.370 1.09e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo8g02234 SRF-TF 6.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02234 - - gsj:114376117 298.901