Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02231 ATGGTTAGGAAAGTGAAGATGAAGAATTGGTTTTGTTGTTGTTGTTGTATTATTGTAGGACTTGCGCCTGAGATTCCGGAGGATCTGTACCATTTGATAAAGCAGGCAGTTTCAATCAGGAAGCATCTGGAGAGGAACAGAAAGGACAAGGACTCCAAGTTCAGACTCATCCTCGTCGAAAGCAGAATCCACCGACTTGCTCACTCTGTCATCGTTGGCGAGTTAACGTTTGAAGGGGAATTCAATGGTGTGCTTGGTTGA 261 0.4444 MVRKVKMKNWFCCCCCIIVGLAPEIPEDLYHLIKQAVSIRKHLERNRKDKDSKFRLILVESRIHRLAHSVIVGELTFEGEFNGVLG 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02231 86 Gene3D - 23 70 - -
Pumo8g02231 86 FunFam 40S ribosomal protein S13 24 70 - -
Pumo8g02231 86 SUPERFAMILY S15/NS1 RNA-binding domain 20 67 IPR009068 -
Pumo8g02231 86 SMART Ribosomal_S15_2 17 78 IPR000589 GO:0003735|GO:0005840|GO:0006412
Pumo8g02231 86 PANTHER RIBOSOMAL PROTEIN S15P/S13E 20 68 IPR023029 -
Pumo8g02231 86 CDD Ribosomal_S15p_S13e 23 67 IPR000589 GO:0003735|GO:0005840|GO:0006412
Pumo8g02231 86 Pfam Ribosomal protein S15 24 67 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02231 Pumo-Chr8 59450263 59450775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02231 20 67 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 95.833 4.29e-28 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02231 K02953 - csav:115711636 95.9005