Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02230 ATGGGGAGGCAACCTTGCTGTGACAAACTTGGGGTGAAGAAAGGTCCATGGACTGCTGAGGAAGACAAAAAACTCATCAACTTCATTCTCACCAATGGCCAGTGCTGTTGGCGTGCTGTTCCCAAGCTTGCTGGGCTTCGACGTTGTGGTAAGAGTTGCCGTCTTCGTTGGACTAATTATCTAAGGCCTGACTTGAAAAGAGGGCTCCTCACACAGGCAGAAGAGCAGCTTGTTATCGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTGCCAGGTTACCAGGAAGGACAGACAACGAGATTAAAAATCACTGGAACACCCACATCAAGAAAAAACTCCTTAAGATGGGTATTGATCCTGTCACTCACGAACCTCTTAACAAGCAAGTCTCATCCAAAGATAATTCGTCCCCAGCAGAGCATTTGCCACAAGTTGATAACACCCATCAGATTAAGGAAAATGATGGGGTTCTCAACTCAGAAGAGAATTCTAGCTCATCACCAGCTGACAATTCTTCTGGGGAAGAATCCCTTTTGGTGGATAGCATTTGCAGTGATGTGTCTCTAATGAACAGCATGTGGCTGGATGAAACTCCTCTGATGGACACATTATGGGACATAACACCAAAAGTAGAGAATGTAAATAGTAACATGGGCTTGCCAATATGGGAGGATAATGCTTGGTTGTTGGACTGCCAAGACTTTGGTATTCATGATTTTGGGTTTAACTGTTTCAGCGAGATTGAGTCAAATGTACTGCAAACTATAGGCATGGACAGAAAAGGGCTTTAG 801 0.4507 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTQAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKQVSSKDNSSPAEHLPQVDNTHQIKENDGVLNSEENSSSSPADNSSGEESLLVDSICSDVSLMNSMWLDETPLMDTLWDITPKVENVNSNMGLPIWEDNAWLLDCQDFGIHDFGFNCFSEIESNVLQTIGMDRKGL 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02230 266 MobiDBLite consensus disorder prediction 128 153 - -
Pumo8g02230 266 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo8g02230 266 CDD SANT 16 61 IPR001005 -
Pumo8g02230 266 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo8g02230 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo8g02230 266 FunFam MYB transcription factor 70 146 - -
Pumo8g02230 266 Gene3D - 12 67 - -
Pumo8g02230 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo8g02230 266 MobiDBLite consensus disorder prediction 160 179 - -
Pumo8g02230 266 Gene3D - 70 155 - -
Pumo8g02230 266 SMART sant 13 63 IPR001005 -
Pumo8g02230 266 SMART sant 66 114 IPR001005 -
Pumo8g02230 266 FunFam MYB transcription factor 11 67 - -
Pumo8g02230 266 PANTHER F14D16.11-RELATED 1 169 - -
Pumo8g02230 266 CDD SANT 71 112 IPR001005 -
Pumo8g02230 266 MobiDBLite consensus disorder prediction 127 153 - -
Pumo8g02230 266 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo8g02230 266 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo8g02230 266 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02230 Pumo-Chr8 59434285 59436089 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02230 1 245 MYB Transcription Factor Family AT4G22680 59.398 9.57e-102 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo8g02230 Myb_DNA-binding 2.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02230 K09422 - gmx:100800360 503.056