Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02224 ATGGATACTTTTTCACATGTTCCTCCTGGCTTTCGTTTCCATCCCACTGACGAAGAACTTGTTGATTACTACCTTAGGAAAAAGGTAGCTTCTAAAAGGATTGATCTAGATGTCATAAAAGATGTCGATCTGTATAAAATCGAGCCATGGGATCTTCAAGAATTATGCAAAATAGGAAGCGATGAAGAGAATGAATGGTATTTCTTTAGTCATAAAGACAAGAAGTACCCAACTGGGACTCGTACCAATAGAGCTACAAAGGCAGGATTCTGGAAAGCTACGGGAAGGGACAAGGCAATTTACTCTAGCCCTAGGCATTGCCTGATTGGCATGAGAAAGACTCTTGTCTTTTACCAAGGAAGAGCCCCAAATGGACACAAATCTGATTGGATCATGCATGAGTACCGCCTACAAACTAATCAAAATGGAACTCCTCAGGAAGAAGGCTGGGTTGTATGTAGAGTGTTCAAAAAACGAATGACAACAGTGAGGAAAATGGGGGAGTATGAGTCACCCTGTTGGTATGACGACCAAGTCTCATTCATGCAAGAGCTTGAATCCCCAAGTCGAATTTCTAACCCTTATGCATCATACCACCAGCACTACCCTTGCAAGAAGGAGTTGGAATTGCAATTCAATATACCCCATGACGCTTTCCTCCAACTTCCACAACTAGAAAGTCCCAGCAAAGTTCCTCAATCTTCAGCCAGTTTGAGTTGTAGCCAAGTTATCCCATATGGCTATGGTAGCAATAATAATGGCAATAATGCTTTGCAGTCCTTGTCACTCACTCAAGAACATTGCCAGCAACAAAGTAGCAGTCTGCAATTTCCCTATGGTAGCAATGATCAAGCAGTGGATGACCATGTTACGGATTGGAGAGTACTTGACAAATTTGTGGCTTCTCAGCTCAGTCACGATGAACATTTTTCCAAGGAAACCACTTATTCCAATGTGGCTGAACAAATTAAGTTGCTAGCAAACGGATATACAAAACCGGAAGAGATTCCTTCAACTTCCACCTCCAGTTGCCAGATTGACCTGTGGAAATGA 1053 0.4226 MDTFSHVPPGFRFHPTDEELVDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGSDEENEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSSPRHCLIGMRKTLVFYQGRAPNGHKSDWIMHEYRLQTNQNGTPQEEGWVVCRVFKKRMTTVRKMGEYESPCWYDDQVSFMQELESPSRISNPYASYHQHYPCKKELELQFNIPHDAFLQLPQLESPSKVPQSSASLSCSQVIPYGYGSNNNGNNALQSLSLTQEHCQQQSSSLQFPYGSNDQAVDDHVTDWRVLDKFVASQLSHDEHFSKETTYSNVAEQIKLLANGYTKPEEIPSTSTSSCQIDLWK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02224 350 FunFam NAC domain-containing protein 16 162 - -
Pumo8g02224 350 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
Pumo8g02224 350 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Pumo8g02224 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 260 - -
Pumo8g02224 350 Pfam No apical meristem (NAM) protein 8 137 IPR003441 GO:0003677|GO:0006355
Pumo8g02224 350 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02224 Pumo-Chr8 59344123 59348484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02224 1 348 NAC Transcription Factor Family AT1G62700 53.676 3.04e-133 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo8g02224 NAM 2.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02224 - - gmx:100779370 615.92