Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02207 ATGGCTCTTCCCCTGTTCCTCCTCTGCTTCATGCTCTGCATCTCACACACACATCAACAGATTCTATTACCTCTAACACACTCAATTTCCAAAACCCAATTCAACAGTACCCACCACCTCCTCAAATCCACCTCCACTCGTTCAGCCTCACGCTTCCACCGCCAACGCCAAACTTTAAAAAACTCAATCTCTCTCCCACTTTCTTCAGGAAGTGACTACACCCTTTCCTTCAACTTAGGCTCACACCCTTCTCAATCCATAACCCTTTATATGGACACAGGCAGCGATCTCGTTTGGTTCCCATGCGCTCCCTTCGAATGCATTCTCTGCGAAGGCAAATTCAACGCCACAAAACCCCTCAACACCACGCGCTCCCACCGCGTCTCGTGCCAGTCCCCTGCGTGTTCAACAGCACACTCCTCCATCTCCTCCCACGACCTCTGCGCAATCGCACGTTGTCCTTTGGACAACATCGAAACCTCCGATTGCTCCTCTGCCACGTGTCCACCTTTCTACTACGCTTACGGCGACGGAAGCTTCATCGCGCACCTCCACCGCGATACACTCTCCATGTCCTCTCTTTTCCTTAAAAACTTCACCTTCGGTTGCGCCCACACCGCACTCGCCGAACCCACCGGCGTCGCAGGTTTCGGTCGGGGCTTACTGTCCCTCCCTGCGCAACTTGCTACCTTATCTCCAAACCTCGGAAACCGTTTCTCTTATTGCTTGGTTTCTCACTCTTTCGACAAGGAACGAGTTCGCAAACCGAGTCCACTCATCCTCGGCCGCTACGATGATTCCGGCGAGCGTGTTGAGTTTGTTTACACCTCCATGCTTCGGAATCCGAAGCATTCTTATTTCTACTGCGTCGGACTCGCCGGAATCTCCGTCGGGAAGAGGAATATTCCAGCGCCGGAGATGCTGCGGAGGGTGGACCGCAAAGGGGACGGCGGCGTGGTTGTTGATAGCGGAACCACTTTCACGATGCTGCCGGCGAGTTTGTACAACTCGGTGGTGGCTGAGTTCGACCGGCGAGTCGGGCGAGTTCAGAAGCGCGCGAGTGAGGTGGAGGAGAAAACGGGCCTCGGGCCGTGTTATTTTTTGGAGGGGTTGGTGGAGGTTCCCACGGTGACGTGGCATTTTGTGGGGAATAATTCCAATGTGGTGCTGCCTAGGAGGAACTATTTTTACGAGTTTTTGGACGGTGAGGATGGGGTCAGGAGGAAGGTGGGGTGCCTGATGCTGATGAACGGTGGTGATGACGCCGAGTTGAGCGGTGGACCCGGGGCTATACTTGGGAACTATCAGCAGCAAGGGTTTGAGGTCGTGTATGACTTGGAAAACCAGCGCGTGGGTTTCGCTAAGAGGCAGTGCGCGTCGCTTTGGGATAACCTCAACCGTGACAAAAGCTAG 1413 0.5428 MALPLFLLCFMLCISHTHQQILLPLTHSISKTQFNSTHHLLKSTSTRSASRFHRQRQTLKNSISLPLSSGSDYTLSFNLGSHPSQSITLYMDTGSDLVWFPCAPFECILCEGKFNATKPLNTTRSHRVSCQSPACSTAHSSISSHDLCAIARCPLDNIETSDCSSATCPPFYYAYGDGSFIAHLHRDTLSMSSLFLKNFTFGCAHTALAEPTGVAGFGRGLLSLPAQLATLSPNLGNRFSYCLVSHSFDKERVRKPSPLILGRYDDSGERVEFVYTSMLRNPKHSYFYCVGLAGISVGKRNIPAPEMLRRVDRKGDGGVVVDSGTTFTMLPASLYNSVVAEFDRRVGRVQKRASEVEEKTGLGPCYFLEGLVEVPTVTWHFVGNNSNVVLPRRNYFYEFLDGEDGVRRKVGCLMLMNGGDDAELSGGPGAILGNYQQQGFEVVYDLENQRVGFAKRQCASLWDNLNRDKS 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02207 470 Gene3D Acid Proteases 55 262 IPR021109 -
Pumo8g02207 470 CDD pepsin_A_like_plant 73 458 IPR034161 -
Pumo8g02207 470 SUPERFAMILY Acid proteases 69 463 IPR021109 -
Pumo8g02207 470 FunFam aspartic proteinase nepenthesin-1 264 463 - -
Pumo8g02207 470 PANTHER ASPARTYL PROTEASES 6 452 IPR001461 GO:0004190|GO:0006508
Pumo8g02207 470 Gene3D Acid Proteases 264 463 IPR021109 -
Pumo8g02207 470 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 319 330 IPR001969 GO:0004190|GO:0006508
Pumo8g02207 470 ProSiteProfiles Peptidase family A1 domain profile. 73 454 IPR033121 -
Pumo8g02207 470 Coils Coil 339 359 - -
Pumo8g02207 470 Pfam Xylanase inhibitor C-terminal 288 454 IPR032799 -
Pumo8g02207 470 FunFam Probable aspartyl protease At4g16563 63 261 - -
Pumo8g02207 470 Pfam Xylanase inhibitor N-terminal 73 262 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02207 Pumo-Chr8 59134170 59136189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02207 48 461 Miscellaneous Gene Families AT1G77480 25.959 5.29e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02207 - - gmx:100807884 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02207 8 59134170 59136189 Pumo8g02207 8 59134170 59136189 ECH
Pumo8g02207 8 59134170 59136189 Pumo4g01667 4 21143814 21145774 PCT