Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02197 ATGGAGCGGCACAAATGCAAGCTCTGCTCCAGAACATTCTCCAATGGCAGAGCCCTCGGTGGCCACATGAAGGCTCACTTAGCCACTCTTCCTCTCCCTCCCAAACCCCAACCACTTTCTCCTCACTCTGCTGCTTCTTTCTCTTCTAATTCTTCTTCCTCTTCAGAAGAAGAAGAAGCAGCCACACACAGAGAACCCGATGAAAAGTCTCTCATTTATGGCTTGAGAGAGAATCCCAAGAAATGCTTCAGGCTTGCAGATCCCGAGTTTGACACGGGCTCTGTCGTGCAAGACAGGGAAAGCGAGACCGAGTCAAAGAACCCAACTCGCCGACGATCTAAGAGGACCCGAAGGCCCGTGAATTCAGAACCCAAGAGGCCCAAACTCAGTTTCATGGAGTCGCCAGAGCCCGTGAGCTCGGTCTCCGACACTTCCCCCGAGGAAGATGTCGCCATGTGTCTCATGATGCTGTCCAGAGACCGATGGAGTAACAACAACAACAACATCAACGTTGTTAGTATTAATAAGGATGATGTTGTTGTTGTCGAAGAAGAGGGTGATCTCTCACTAGAGATCAAGTTCAGGAGAGTTCGCGGGAAGCACCAGTGCCAGAGTTGCGGGAAGACGTTTCGATCTTCACGCGCATTGGGCAGTCACAGAAGCATTTGCGAAGGTTCGGGTAACGATAGTAAAATCTTCCAATGCCCCTTTTGTTCTAAGGTGTTTGGGTCTGGTCAAGCACTCGGTGGCCACAAGAGATCTCACCTCATGCCTTCTTCCTCCTCCACTGCCAATGATTCTACTACTAGATTGAAAGAGAGCTTCATAGATCTCAACTTGCCAGCTCCGGCCGAAGATGACGACCTTAGTGTTGTTTCTGATGCCTAA 888 0.5011 MERHKCKLCSRTFSNGRALGGHMKAHLATLPLPPKPQPLSPHSAASFSSNSSSSSEEEEAATHREPDEKSLIYGLRENPKKCFRLADPEFDTGSVVQDRESETESKNPTRRRSKRTRRPVNSEPKRPKLSFMESPEPVSSVSDTSPEEDVAMCLMMLSRDRWSNNNNNINVVSINKDDVVVVEEEGDLSLEIKFRRVRGKHQCQSCGKTFRSSRALGSHRSICEGSGNDSKIFQCPFCSKVFGSGQALGGHKRSHLMPSSSSTANDSTTRLKESFIDLNLPAPAEDDDLSVVSDA 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02197 295 MobiDBLite consensus disorder prediction 93 109 - -
Pumo8g02197 295 MobiDBLite consensus disorder prediction 93 146 - -
Pumo8g02197 295 MobiDBLite consensus disorder prediction 28 73 - -
Pumo8g02197 295 MobiDBLite consensus disorder prediction 57 73 - -
Pumo8g02197 295 Gene3D Classic Zinc Finger 198 255 - -
Pumo8g02197 295 MobiDBLite consensus disorder prediction 249 268 - -
Pumo8g02197 295 ProSitePatterns Zinc finger C2H2 type domain signature. 235 255 IPR013087 -
Pumo8g02197 295 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Pumo8g02197 295 MobiDBLite consensus disorder prediction 41 56 - -
Pumo8g02197 295 SMART c2h2final6 4 26 IPR013087 -
Pumo8g02197 295 SMART c2h2final6 233 255 IPR013087 -
Pumo8g02197 295 SMART c2h2final6 201 221 IPR013087 -
Pumo8g02197 295 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 295 IPR044303 GO:0006355
Pumo8g02197 295 SUPERFAMILY beta-beta-alpha zinc fingers 201 255 IPR036236 -
Pumo8g02197 295 Pfam C2H2-type zinc finger 3 28 - -
Pumo8g02197 295 Pfam C2H2-type zinc finger 201 220 - -
Pumo8g02197 295 Pfam C2H2-type zinc finger 233 256 - -
Pumo8g02197 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 201 230 IPR013087 -
Pumo8g02197 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Pumo8g02197 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 260 IPR013087 -
Pumo8g02197 295 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02197 Pumo-Chr8 59034453 59036128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02197 1 292 C2H2 Transcription Factor Family AT3G60580 35.276 3.17e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo8g02197 zf-C2H2_6 9.3e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02197 - - gmx:100815124 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02197 8 59034453 59036128 Pumo4g01677 4 21304030 21305029 PCT