Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02177 ATGGCACCCCCCAAGAATGATGAAACTGCTAAGAAAACGAACAACAGAGGAGCATGGACCGCGGAGGAAGATCAGAAGCTAGCCCAATGCATTGAAATTCACGGTGCAAAGAGGTGGAAAACTGTTGCAATTAAATCAGGTCTAAACAGATGTGGAAAAAGTTGCAGGCTGAGATGGTTAAACTATCTAAGACCCAATATCAAGAGGGGCAACATATCAGTTGAAGAAGAGGATTTGATTATTAGGCTTCACAAACTGCTGGGAAACAGGTGGTCATTGATAGCTAAGAGGCTTCCAGGACGAACAGACAATGAAATTAAGAACTACTGGAATACTTGTTTGTGCAAAAAAGTTAATCACACAAAGGTGAAAGCAGAAACTTCAACAGCACAAGCAACACATACGACTCAGAATATTGAGGAAAGAGTAGCAGTGGAGAATAAAGAAGCCACTGATGATGGGAGTGGGGACTCAGAAGTTAACTTTGATGTGAACGAATTCTTCAACTTCTCCTTCGAAGGACCCTATGCGTTGGATTGGATGATCTAG 549 0.4208 MAPPKNDETAKKTNNRGAWTAEEDQKLAQCIEIHGAKRWKTVAIKSGLNRCGKSCRLRWLNYLRPNIKRGNISVEEEDLIIRLHKLLGNRWSLIAKRLPGRTDNEIKNYWNTCLCKKVNHTKVKAETSTAQATHTTQNIEERVAVENKEATDDGSGDSEVNFDVNEFFNFSFEGPYALDWMI 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02177 182 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Pumo8g02177 182 FunFam Transcription factor TT2 72 142 - -
Pumo8g02177 182 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Pumo8g02177 182 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pumo8g02177 182 SMART sant 68 116 IPR001005 -
Pumo8g02177 182 SMART sant 15 65 IPR001005 -
Pumo8g02177 182 CDD SANT 73 112 IPR001005 -
Pumo8g02177 182 Gene3D - 73 146 - -
Pumo8g02177 182 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Pumo8g02177 182 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pumo8g02177 182 CDD SANT 18 63 IPR001005 -
Pumo8g02177 182 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 9 143 - -
Pumo8g02177 182 FunFam MYB-related transcription factor 15 68 - -
Pumo8g02177 182 Gene3D - 8 69 - -
Pumo8g02177 182 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pumo8g02177 182 SUPERFAMILY Homeodomain-like 15 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02177 Pumo-Chr8 58871847 58873495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02177 8 173 MYB Transcription Factor Family AT5G52600 51.205 8.54e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo8g02177 Myb_DNA-binding 4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02177 K09422 - gmx:100791381 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02177 8 58871847 58873495 Pumo4g01692 4 21476601 21478597 PCT