Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02176 ATGGAAGTCCAAACAACTGCTTCCTCCAACGATGGCATTAATTCAGAGAAGAAAAGTGAAGGCAAAGAAGCAAAGAAGAATAAGAATAAGAAGAAGAGAAGCAGTGATGGGAAGCACCCAACGTATCGCGGGGTACGCATGCGTCAGTGGGGGAAATGGGTTTCAGAAATAAGAGAGCCCAAAAAAAAGTCCAGAATTTGGCTCGGCACTTTTCCCACCCCAGAGATGGCGGCCCGAGCCCATGATGTTGCGGCTCTCACTATCAAAGGCACTTCTGCGTTCCTTAATTTCCCCGAATTAGCCTCACACCTTCCGCGCCCACTCACCACTTCCCCTAAGGATATCCAAGCCGCCGCCGCCAAAGCAGCTGCACTCAACTGTGAAGCCCAAACCCGGGCCCAATCATCGAATTCTTCGTTAAGCGATGAGGATGACGCGTTCTTGGACCTCCCTGATCTTTTACTCGACTCAAGTTACTGTGCAGGTGAGTTTCGTTACTCGGCGCCGTGGCTCGTAGCCGGAGCTGAACATCTAGACTTGGGTTTTCGGCTCGATGACCCTCCTTTCCCTTGGGACTCTTACTAA 585 0.5111 MEVQTTASSNDGINSEKKSEGKEAKKNKNKKKRSSDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAALTIKGTSAFLNFPELASHLPRPLTTSPKDIQAAAAKAAALNCEAQTRAQSSNSSLSDEDDAFLDLPDLLLDSSYCAGEFRYSAPWLVAGAEHLDLGFRLDDPPFPWDSY 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02176 194 CDD AP2 42 100 IPR001471 GO:0003700|GO:0006355
Pumo8g02176 194 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Pumo8g02176 194 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Pumo8g02176 194 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Pumo8g02176 194 MobiDBLite consensus disorder prediction 1 45 - -
Pumo8g02176 194 Pfam AP2 domain 40 90 IPR001471 GO:0003700|GO:0006355
Pumo8g02176 194 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677
Pumo8g02176 194 FunFam Ethylene-responsive transcription factor 2 40 99 - -
Pumo8g02176 194 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Pumo8g02176 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 155 - -
Pumo8g02176 194 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02176 Pumo-Chr8 58860186 58860798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02176 31 189 AP2-EREBP Transcription Factor Family AT2G44940 46.479 1.27e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo8g02176 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02176 - - gmx:100817503 268.47