Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02171 ATGATTGAACTCCCCACTCCCACCCATTTTCCCTCCTTTCTATATAATCCCCTCCACACCACTTCTCCACTTCATACCATATCATATCATAGTCACCCCGAACCTCTATATCACTCTTCTTTCATCTCTCTCCACTACCTTACCTTCAAAACTCTCACAAGGGTGTTATTATTAGAGATGACGGTTGAAAAGGAAGATTTGGGCTTGAGTCTAAGCTTGAGCTTCCCTCAGAACCCCCCAACTCCTCTTCATCTCAATCTCGTGTCCTCTCCTACTGGTCACAACCCTCATAAACCCTCTTGGAACGAGGCTTTCACTTCTTCAGGTGAAGCTGGATCATTCCTCCGCGGAATCGATGTGAACCGGTTACCTTCTGTGGTTGATTGCGAAGAGGAAGCATGTGTTTCATCTCCAAACAGCACGGTTTCTAGCGTCAGTGGAAAACGTAGCGAGAGGGAAGCCAATGGAGAAGAACACGACACAGACAGAGCTTGTTCCAGAGGCATCAGTGACGAAGAAGATGGCGAAACCTCTAGAAAGAAACTTAGACTCTCCAAAGACCAGTCAATTATCCTCGAAGAGAGCTTCAAAGAACACAACACTCTCAACCCCAAGCAAAAGTTGGCACTGGCGAAACAGCTGGGTCTTAGAGCGAGACAAGTGGAGGTGTGGTTCCAGAACAGAAGGGCAAGGACGAAGCTGAAGCAAACGGAGGTGGACTGCGAGTTTTTGAAAAGGTGCTGCGAGAATCTGACGGAGGAGAACAGGAGGTTGCAGAAGGAAGTGCAAGAGCTTAGAGCACTGAAACTTTCCTCGCAGTTCTACATGCACATGACCCCACCCACCACCCTCACCATGTGCCCCTCGTGTGAGCGTGTCGCAGTTCCCCCATCTGCCGTTGATGCTGCCACGCGTCACCATCACGTGCCCCCTCGGCCCTTCCCCATTGGTCCATGGGCCACTGCTGCTGCAACTATTCCACACATACCCTTCGATGCCCTCCGTCCCAGATCTTGA 1017 0.5034 MIELPTPTHFPSFLYNPLHTTSPLHTISYHSHPEPLYHSSFISLHYLTFKTLTRVLLLEMTVEKEDLGLSLSLSFPQNPPTPLHLNLVSSPTGHNPHKPSWNEAFTSSGEAGSFLRGIDVNRLPSVVDCEEEACVSSPNSTVSSVSGKRSEREANGEEHDTDRACSRGISDEEDGETSRKKLRLSKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSSQFYMHMTPPTTLTMCPSCERVAVPPSAVDAATRHHHVPPRPFPIGPWATAAATIPHIPFDALRPRS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02171 338 SMART halz 235 278 IPR003106 GO:0006355|GO:0043565
Pumo8g02171 338 Coils Coil 234 271 - -
Pumo8g02171 338 MobiDBLite consensus disorder prediction 150 181 - -
Pumo8g02171 338 FunFam Homeobox-leucine zipper protein 18 166 240 - -
Pumo8g02171 338 Gene3D - 183 233 - -
Pumo8g02171 338 SUPERFAMILY Homeodomain-like 169 236 IPR009057 -
Pumo8g02171 338 Pfam Homeodomain 179 233 IPR001356 GO:0003677
Pumo8g02171 338 PRINTS Lambda-repressor HTH signature 215 231 IPR000047 GO:0003677
Pumo8g02171 338 PRINTS Lambda-repressor HTH signature 206 215 IPR000047 GO:0003677
Pumo8g02171 338 CDD bZIP 226 267 - -
Pumo8g02171 338 MobiDBLite consensus disorder prediction 137 181 - -
Pumo8g02171 338 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 68 303 - -
Pumo8g02171 338 ProSiteProfiles 'Homeobox' domain profile. 175 235 IPR001356 GO:0003677
Pumo8g02171 338 ProSitePatterns 'Homeobox' domain signature. 210 233 IPR017970 GO:0000981|GO:0006355
Pumo8g02171 338 SMART HOX_1 177 239 IPR001356 GO:0003677
Pumo8g02171 338 CDD homeodomain 179 236 IPR001356 GO:0003677
Pumo8g02171 338 Pfam Homeobox associated leucine zipper 235 269 IPR003106 GO:0006355|GO:0043565
Pumo8g02171 338 Pfam HD-ZIP protein N terminus 62 153 IPR006712 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02171 Pumo-Chr8 58813365 58815382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02171 60 338 Homeobox Transcription Factor Family AT5G47370 63.265 5.61e-115 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo8g02171 HD-ZIP_N 3.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02171 K09338 - gmx:100783851 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02171 8 58813365 58815382 Pumo4g01699 4 21627485 21629471 PCT