Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02165 ATGGCAAACGCTCTTGAAGTTTCTGCTCTCAATCGCATAAAACTGCATCTTCTAGGAGAACTTTCTCCTCTTCCAGTTACTTCCTCCTCTAACCTCACCCAAAACAGCAACTTCTCTTTTCAATTTGAGGAACCAAACACATCCTCCTCTCAATCAACCTTCCTCTGTTCCCAATCTTCAAGTTCTGATTCATCCGCCACAGTTGACCAAATCTTCTTTGAATTCCTTGATTTCCCAACTACCTCCAGAGAAAACCAGTTTCCTCTCTTCGAATTTGAATCCAAACCGCAAATAATTGACCTCGAAACCCCGAAGCCACAAACATCACCGTTGGAATTCACGTTTCCAACCACACAGGACCGTAATAAGAAACCTCAACCTAGTCGAAAGCCGTCGCTGCAGATCTCTCTCCCGAAGAAGACCGAGTGGATCCAATTCGGAGAGCCTGAGGTTACTGAAACTGAAACGGTGTCGCAGAGTAATCCAAACACGGAAGAGAAGAAGCACTACAGAGGAGTTAGACAGAGACCGTGGGGGAAGTACGCGGCGGAGATTCGGGACCCGAACAAGCGCGGCTCCAGGGTGTGGCTCGGGACGTTCGACACGGCTATCGAAGCCGCCAAAGCCTACGACCGAGCCGCGTTCAGGCTTCGCGGCTCCAAAGCCATCCTCAACTTCCCCCTTGAAGCCGGCGCCGATGACCGCAAACGCCAAAGGGAAGAGGAGGAGGAGCCCGCGGTGGAAGTCGTCAAGAGGGAAAAGATAGAGGAATCCGACGTTAGCCGTATTAAGGATACTCCGTTAACGCCGTCTAGTTGGTTAGGGTTCTGGGGTAGTGATGCAAACGGAATCTTCACCGTCCCGCCCTTGTCGCCGTTATCTCCCCACCCGGCGTTGGGTTATCCACAGCTTATGGTTGTGTGA 924 0.513 MANALEVSALNRIKLHLLGELSPLPVTSSSNLTQNSNFSFQFEEPNTSSSQSTFLCSQSSSSDSSATVDQIFFEFLDFPTTSRENQFPLFEFESKPQIIDLETPKPQTSPLEFTFPTTQDRNKKPQPSRKPSLQISLPKKTEWIQFGEPEVTETETVSQSNPNTEEKKHYRGVRQRPWGKYAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFRLRGSKAILNFPLEAGADDRKRQREEEEEPAVEVVKREKIEESDVSRIKDTPLTPSSWLGFWGSDANGIFTVPPLSPLSPHPALGYPQLMVV 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02165 307 SMART rav1_2 169 233 IPR001471 GO:0003700|GO:0006355
Pumo8g02165 307 MobiDBLite consensus disorder prediction 103 134 - -
Pumo8g02165 307 Gene3D AP2/ERF domain 168 229 IPR036955 GO:0003700|GO:0006355
Pumo8g02165 307 PRINTS Ethylene responsive element binding protein signature 209 229 IPR001471 GO:0003700|GO:0006355
Pumo8g02165 307 PRINTS Ethylene responsive element binding protein signature 170 181 IPR001471 GO:0003700|GO:0006355
Pumo8g02165 307 Pfam AP2 domain 169 219 IPR001471 GO:0003700|GO:0006355
Pumo8g02165 307 ProSiteProfiles AP2/ERF domain profile. 169 227 IPR001471 GO:0003700|GO:0006355
Pumo8g02165 307 PANTHER DNA-BINDING DOMAIN 124 241 IPR044808 GO:0003700|GO:0009873
Pumo8g02165 307 SUPERFAMILY DNA-binding domain 169 228 IPR016177 GO:0003677
Pumo8g02165 307 CDD AP2 168 227 IPR001471 GO:0003700|GO:0006355
Pumo8g02165 307 MobiDBLite consensus disorder prediction 150 173 - -
Pumo8g02165 307 FunFam Ethylene-responsive transcription factor 2 168 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02165 Pumo-Chr8 58741185 58742387 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02165 94 307 AP2-EREBP Transcription Factor Family AT5G47230 53.306 1.30e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo8g02165 AP2 7.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02165 K09286 - gmx:100808173 441.81