Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02164 ATGTACCATAGCTTTTATAAATACCCCCATCCATTTTCCCTTCCAAGTTCGAATATTCAATTCAACACCTTCTTCCCTCAATCTCTTCTCCAAACAGAAGAAACATATCACGAAATGTACGGACAAAGTAACTACGAGTCCGATTTGGCCCATTTGGACTCCATTCGCCGCCACTTACTCGGGGACTCCGAGGAACACAAATTCGGAGCCTCGAATGTTAATTCGGGCAACACTCCAGTGTATTCTCGGAGCTCCAGTTTCAGCAGGTTGTACCCTTGCTTGAGTAACGATTGGGGCGAGCTTCCTCTTAAGGAAGATGATTCAGAGGACATGCTTCTTTACGGTGTTCTTCGCGATGCCATGAACGTAGGGTGGGTCCCATCCCTTGACGCAGCCTCGCCGGAGAGTTTCTCGTCGGGTTTCCTCCCGGCGGTGACCGTGAAATCGGAACCGGATCTATTTCCGGCGCCGGAGCCCGTCTTTATCCCTCCGGTGGTTCCGAAGGCGGAACCGGCGGTGGTTCCGGCGAAGGGGAAGCACTACCGAGGCGTGCGGCAGCGGCCGTGGGGGAAATTTGCGGCAGAGATCCGCGACCCGGCTAAAAACGGGGCTCGGGTTTGGCTCGGAACGTTTGAAACGGCTGAGGACGCCGCGCTGGCTTACGATCGAGCCGCGTACCGAATGCGCGGCTCGCGGGCTTTGTTGAATTTTCCGCTTCGGATTAATTCGGGCGAGCCCGAACCGGTTCGGGTCACGGCGAAGCGGTCGTCGCCGGAGCCGTCGTCTTCGTCGGATAGTGGTTCGTCGGCAAAGAGGAGGAAGAAGGTGGTGGGGTCCACGGTGACGGCTCAAAGTGGGTTGAGAACGGGGCAAGTGGGAAGTCAAGTGGCACAGTGCACACGTGGAGAGCAGTTGTTGGTGAACTAA 927 0.5599 MYHSFYKYPHPFSLPSSNIQFNTFFPQSLLQTEETYHEMYGQSNYESDLAHLDSIRRHLLGDSEEHKFGASNVNSGNTPVYSRSSSFSRLYPCLSNDWGELPLKEDDSEDMLLYGVLRDAMNVGWVPSLDAASPESFSSGFLPAVTVKSEPDLFPAPEPVFIPPVVPKAEPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRVTAKRSSPEPSSSSDSGSSAKRRKKVVGSTVTAQSGLRTGQVGSQVAQCTRGEQLLVN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02164 308 PANTHER DNA-BINDING DOMAIN 156 272 IPR044808 GO:0003700|GO:0009873
Pumo8g02164 308 SMART rav1_2 180 244 IPR001471 GO:0003700|GO:0006355
Pumo8g02164 308 CDD AP2 179 238 IPR001471 GO:0003700|GO:0006355
Pumo8g02164 308 MobiDBLite consensus disorder prediction 245 283 - -
Pumo8g02164 308 MobiDBLite consensus disorder prediction 255 283 - -
Pumo8g02164 308 Pfam AP2 domain 180 230 IPR001471 GO:0003700|GO:0006355
Pumo8g02164 308 Gene3D AP2/ERF domain 179 241 IPR036955 GO:0003700|GO:0006355
Pumo8g02164 308 ProSiteProfiles AP2/ERF domain profile. 180 238 IPR001471 GO:0003700|GO:0006355
Pumo8g02164 308 FunFam Ethylene-responsive transcription factor 2 179 239 - -
Pumo8g02164 308 SUPERFAMILY DNA-binding domain 180 240 IPR016177 GO:0003677
Pumo8g02164 308 PRINTS Ethylene responsive element binding protein signature 181 192 IPR001471 GO:0003700|GO:0006355
Pumo8g02164 308 PRINTS Ethylene responsive element binding protein signature 204 220 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02164 Pumo-Chr8 58698956 58700426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02164 39 307 AP2-EREBP Transcription Factor Family AT4G17500 56.228 2.89e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo8g02164 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02164 K09286 - gmx:100819649 445.277