Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02162 ATGGCTGCATTAAACCTCCTTATAGCTACAGTACTCATCTATATTCATCATGTTTCCTTAGCTTTTGCAAACTTTAGTCTGAACTCGCAACTTTCCACCGATGCCAATGATGCGTGGCGTTCAGCTTCGGGTGAATTTGCTTTCGGGTTTCGGCAACTGAATAATGATACCAAGCTGTTCATGGTTGCCATCTGGTACGACATGATACCCGGCGACCAGACCATCGTTTGGAGTGCAAAACAAGACAACAAACTTGCGACAGCACCGACAGGATCACGGGTTCAGATCACATCAGAAGGGCTCGCGCTGAAAGATCCCGAAGGAAATTCCATATTGATATCAAATTCAAAAGATATTGTTTCGGAAGGAGCTATGCTTGACACTGGCAACTTTGTTCTCCTAAACGGCAACTCTGATTTTGTGTGGCAAAGTTTTGACAATCCCACAGACACCTTGTTGCCTAATCAATCTCTCCAGCTGGGAGGCGTGCTGACTTCTCGATTGACAGACACCAATTACACAACTGGAAGGTTCCAACTTTATTTTGAGGGTGGTGATGTCTTGCTCAGCCCCCTTGCTTGGCCTTCTCAATTGCGTTACAACTCTTATTATCATGCAATGGATGCGTCTGGCTCTGGCAATGCTTCACGATTAGTGTTCGATAAATCAGGGGATATCTATGTAGAGACCACCAATGGGACTAGAATCCAACCTCAAGGTCCAAAATGGATTATTAACTTGGATCTCGATCCCGAGGTGTATTACTACAGAGCAACGCTTGACTTCAGTGGAGTTTTCACGCAGTATGCTCATCCGAGGAACACCACTGCCCAGCAAGGGTGGACAATCATGAGGTATGTTCCTGACAACATTTGTAATGAAATATACAATGAGTATGGTAGCGGTTCCTGTGGCTATAACAGCTATTGCTCCATGGAAAATCAGAGGCCTACTTGCAACTGCCCTTATGGGTATTCACTAGTGGATCCAAGTAATGAATTTGGTGGATGCCAGCCCAATTTCACCCTCGCTTGTGGAGCCGATGTTCAAGCACAGCCAGAAGAACTATATGAAATGCATGAATCTAGAAATTTTAATTTTCCTGATGGTGATTATGAAAAGATACAACCTTACTCTTCACATGAATGCCAACAATCTTGCTTGCACGATTGCATGTGTGCTATGGCCATTTTAGGCGGCAACGTTTGTTGGATGAAGAGATTGCCCCTTTCTAACGGAAGATTAACCCAAGTTAGTGATCAACATTTTGTTTATATCAAAACAAGAGTTAGTCGTGACTTTTATCCAGGTGGAAACGGGGAACTTCCCCCTGGTGCCGATTCAAAGAAAGAAGATGGAGCTAAGCCAATTCTTTTGGGATCACTTATTGGCTCCCTTATCCTTAACAGTATTCTACTGGCTACAGTTGCTTTGTTTATTCTCTTGAAGCCGAAACTGAAAATGGTTGTACCAGTTGCTGCTAGTCTTTTGGAAACAAATTTGCATTCATTTACTTATGAAACATTGGAAAAAGCCACACGGGGTTTTAATGAGGAAATAGGCAGGGGTTCTTATGGCATTGTTTACAAAGGCCAACTAGAAGCAAGTTCTTGTAACGTGGTTGCCGTCAAGAGATTGGACAGATTGGCACAAGAACGAGAGAGAGAATTTAGGACTGAGTTGAGTGCCATTGGTAGAACCTGTCACAAAAATCTGGTAAGGTTGATTGGATTTTGTGACGAGGGAATCAATAGACTATTGGTTTACGAGTTCATGAGCAATGGTACTCTTGCAGACATCCTATTTGGACAATCCAAACCCATCTGGAATTTAAGGGTTGGACTTGCTTTGGGGATTGCAAGAGGGTTGTTGTACTTACACGAAGAGTGTGACACTCCCATCATTCATTGTGATATTAAACCTCAGAATATACTCATAGATGAACATTTCAATGCAAAGATCTCTGACTTTGGGTTGGCCAAGTTGTTGTTGTTTGACCAAAGTAGAACCAATACGATGATCCGAGGAACTCGAGGATATGTGGCACCTGAATGGTTCAAGAATGTTGCTGTGACGGTTAAAGTGGATGTTTACAGCTTTGGGGTAATGTTGTTGGAAATTATTTGCTGCAGAAGAAGTGTGTTGACCATGGAACCCGGGGAAGAAGAGAAGGCAATACTGACAGACTGGGCTTATGATTGTTGTGTGGAAGGGAGGTTAGATGCTTTGGTGGAGAACGATCAGGAAGCCTTGTCTGACATTGGCAGGTTAGAAAAGTGGGTAAAGATAGCAATGTGGTGCATTCAAGAGAATCCTGAAATGAGGCCAACTATGGGGAAGGTCATCCAAATGCTGGAAGGTTTGGTTCAAGTCGATAATCCACCATCGCCTTTTCCTGATATTTGA 2406 0.4318 MAALNLLIATVLIYIHHVSLAFANFSLNSQLSTDANDAWRSASGEFAFGFRQLNNDTKLFMVAIWYDMIPGDQTIVWSAKQDNKLATAPTGSRVQITSEGLALKDPEGNSILISNSKDIVSEGAMLDTGNFVLLNGNSDFVWQSFDNPTDTLLPNQSLQLGGVLTSRLTDTNYTTGRFQLYFEGGDVLLSPLAWPSQLRYNSYYHAMDASGSGNASRLVFDKSGDIYVETTNGTRIQPQGPKWIINLDLDPEVYYYRATLDFSGVFTQYAHPRNTTAQQGWTIMRYVPDNICNEIYNEYGSGSCGYNSYCSMENQRPTCNCPYGYSLVDPSNEFGGCQPNFTLACGADVQAQPEELYEMHESRNFNFPDGDYEKIQPYSSHECQQSCLHDCMCAMAILGGNVCWMKRLPLSNGRLTQVSDQHFVYIKTRVSRDFYPGGNGELPPGADSKKEDGAKPILLGSLIGSLILNSILLATVALFILLKPKLKMVVPVAASLLETNLHSFTYETLEKATRGFNEEIGRGSYGIVYKGQLEASSCNVVAVKRLDRLAQEREREFRTELSAIGRTCHKNLVRLIGFCDEGINRLLVYEFMSNGTLADILFGQSKPIWNLRVGLALGIARGLLYLHEECDTPIIHCDIKPQNILIDEHFNAKISDFGLAKLLLFDQSRTNTMIRGTRGYVAPEWFKNVAVTVKVDVYSFGVMLLEIICCRRSVLTMEPGEEEKAILTDWAYDCCVEGRLDALVENDQEALSDIGRLEKWVKIAMWCIQENPEMRPTMGKVIQMLEGLVQVDNPPSPFPDI 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02162 801 ProSitePatterns Protein kinases ATP-binding region signature. 520 544 IPR017441 GO:0005524
Pumo8g02162 801 Pfam D-mannose binding lectin 74 160 IPR001480 -
Pumo8g02162 801 ProSiteProfiles Protein kinase domain profile. 514 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g02162 801 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 592 793 - -
Pumo8g02162 801 SMART serkin_6 514 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g02162 801 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 31 797 - -
Pumo8g02162 801 FunFam Serine/threonine-protein kinase 149 295 - -
Pumo8g02162 801 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Pumo8g02162 801 ProSiteProfiles Bulb-type lectin domain profile. 24 146 IPR001480 -
Pumo8g02162 801 Pfam PAN-like domain 359 407 IPR003609 -
Pumo8g02162 801 CDD STKc_IRAK 520 788 - -
Pumo8g02162 801 Gene3D Phosphorylase Kinase; domain 1 482 591 - -
Pumo8g02162 801 SUPERFAMILY Protein kinase-like (PK-like) 497 786 IPR011009 -
Pumo8g02162 801 Gene3D - 22 147 IPR036426 -
Pumo8g02162 801 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 169 IPR036426 -
Pumo8g02162 801 PIRSF SRK 1 800 IPR024171 GO:0004674
Pumo8g02162 801 Pfam Protein kinase domain 517 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g02162 801 SMART blect_4 30 148 IPR001480 -
Pumo8g02162 801 Gene3D Transferase(Phosphotransferase) domain 1 592 793 - -
Pumo8g02162 801 FunFam S-receptor-like serine/threonine-protein kinase 485 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02162 Pumo-Chr8 58691265 58693670 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02162 500 787 Receptor kinase-like Gene Family AT1G60800 42.712 1.43e-67 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Pumo8g02162 Pkinase 2.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02162 - - gmx:100789263 1275