Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02160 ATGGTTGACTTGAAGAATGGTTCAGCTGTTAATTTGGACAATTCAGCAGCTAATTTGGATGAAGACAATGATGTCCTTGTTAGTAATAATGGCATTTCTGATCGAAGCGATGCTGAAATGGATGAAGATGTTGATGACGAACAAGAGGATGCTAATGTTAATGTGATAGTGGATCAGTTCAAACATATTATTGAATTGACACCAGAAGATGTAGAGGCAAAGGTGTTTTCAAGTGAAGATGCTGCTTATAGATTTTATCATTTATATGGAAAGTTACATGGTTTTGGAATAAGGAAACAAGAGGTACGCTATGATGTGAATGGGAAAGTTAAAACGCGTCAGTTTGTATGCAACAAAGCTGGATTGAGAGACAAGAAGCACTTGATGAGGGACAACAGGAAAAGGGATCACAGACCTCTTACCCGTACAAATTGTAAAGCCAAGTTGCGTGTAAAGTTGGATCCCACTACATTGAAGTGGATAGTTGTTTCATTTGAGGAAACTCATAACCATCAATTGTGCGAGTCCAATTTTGTGCCCTTAATTCGTACATATAGAGGGTTGACAGATGCAGACAAAGCTCAAGTGAATAGTTTGCATGCACAAGGTGTAAGAACTTGTCAGATAATGGGTTATATGATGGACCAAAAAGGTGGTCATGCTGGTGTTGGTTACTCTAAGAAAGATTTGTTCAATCATATTGAGCAAGAAAGACGTTTCAAAGTGAAAGACGGTGATATATATGCTGCCTTAACTTATCTACAGTGCAAGGCAGATAATGATCCAATGTTCTTTTCAAAATATATGGTCACAGATGATGGTAAGTTGACTCACTTATTTTGGGCTGATGGTCATAGTAGGGCTGATTTTCAATGTTTTGGAGACGTTCTTGCATTTGACAGCACCTACAAGAAGAACAAGTACAACAAGCCGTTGGTAATTTTTTCTGGTAAAAATCATCATAATGAAACTGTGATATTTGGATGTGCACTTGTTTCGGATGAAACTACTGAAACTTACAAGTGGGTATTAGAAACTTTTTTGGAATCAATGTGCAATAAGCATCCAAAAGGTGTAGTGACAGATGGTGATGCTACAATGCGGGAAGCAATTAAGAAAGTTTTTCCCGACGCAACACATAGACTTTGTGCTTGGCACTTGGGGAAGAATGCTTATGAGCATGTGAAGAATGATGGGTTTTTAGAAGATTTCAACAAAGCAATGTATGCTAATTTTACACCAGAAAAATTTGAGACTTTTTGGAATGACATGGTGGTTAAACACCAGCTTGAAGGAAACAATTGGGTTTCCCAAACTTACAATAAGAGGTTTATGTGGGCCACCGCTTACCTACGTGACAAATTTTGGGCTGGCTTAAGAACTACTTCTCTATGTGAAGGAGTAAATTCTGGCATAAAGACATATGTTAAAAGGAAAAATACAATTGTGGAGGTGCTGTACAATTTAGAGAACTCCTTAAGAGATTACAGATATAAGGAGTTGGTTAAGGATTTTAATTCTTTTTACACTGAACCTTATATCAATTCTTGTCTTCCTACGATTGAGCGACATGCCGCAAAGATCTTTACCAGGGATATTTATAAGTTGGTCAGAACAGAGATTCTAGCTGCTGGTTCATTGAATGTGATTGAGAGGACGGAAAATGAGGACAAAGTCATATTTAGGATGGACCAACATTGTCAGCGTCGTAGAGAACATGAAGTTTTTTTTTATAAACATGAGTGTAAGTTTGAATGTGGTTGTATGCTGTTTGAATATAGTGGCATTCCATGTAGCCACATAATATGTGCTATGCGGCTTGACCACATGGATAAATTTCCTACAAGTTTGATTTTAAAGCGTTGGTTGAAGGATGCCAAGAGTTCATATATTTCATGCTACAATTCAGAGAATAAGGACAATAACATGATGGTTGTTGCTCGTTTTGGTGTGTTGGCTGCATGTTGTAATAGACTCTGTCACATTGCTGCCAAGAAGCGTGAAGTTTTTGATGTTATTAGAGATGAAATTATGAAGTTGACCACTAAGTTACAACAGGAAGGGGATACTAATGGTATTTTTATGGGTGATATGGTTGATGTTAGAGATCCCAATGTGGTTAAGATAAAAGGTACTCCACAAAGGAAAAAGTGCAAGAAGAAATTTAAATGTTCAAGCTGTAATAAAAGTGGTCACAAAGTAACTACTTGTCCTTTGCTTCGTCCTAAGGATGATGATTGTAGCGATGGCCATGATGTTGGTGGTTCGACTTTTGTTCATATTACAAAAGATCAAGACATTGTAATTTACTTAATCTATAAATTTTGTTATTTTTTAATTAAATTCTTTTAA 2352 0.3673 MVDLKNGSAVNLDNSAANLDEDNDVLVSNNGISDRSDAEMDEDVDDEQEDANVNVIVDQFKHIIELTPEDVEAKVFSSEDAAYRFYHLYGKLHGFGIRKQEVRYDVNGKVKTRQFVCNKAGLRDKKHLMRDNRKRDHRPLTRTNCKAKLRVKLDPTTLKWIVVSFEETHNHQLCESNFVPLIRTYRGLTDADKAQVNSLHAQGVRTCQIMGYMMDQKGGHAGVGYSKKDLFNHIEQERRFKVKDGDIYAALTYLQCKADNDPMFFSKYMVTDDGKLTHLFWADGHSRADFQCFGDVLAFDSTYKKNKYNKPLVIFSGKNHHNETVIFGCALVSDETTETYKWVLETFLESMCNKHPKGVVTDGDATMREAIKKVFPDATHRLCAWHLGKNAYEHVKNDGFLEDFNKAMYANFTPEKFETFWNDMVVKHQLEGNNWVSQTYNKRFMWATAYLRDKFWAGLRTTSLCEGVNSGIKTYVKRKNTIVEVLYNLENSLRDYRYKELVKDFNSFYTEPYINSCLPTIERHAAKIFTRDIYKLVRTEILAAGSLNVIERTENEDKVIFRMDQHCQRRREHEVFFYKHECKFECGCMLFEYSGIPCSHIICAMRLDHMDKFPTSLILKRWLKDAKSSYISCYNSENKDNNMMVVARFGVLAACCNRLCHIAAKKREVFDVIRDEIMKLTTKLQQEGDTNGIFMGDMVDVRDPNVVKIKGTPQRKKCKKKFKCSSCNKSGHKVTTCPLLRPKDDDCSDGHDVGGSTFVHITKDQDIVIYLIYKFCYFLIKFF 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02160 783 SMART 26again6 584 611 IPR006564 GO:0008270
Pumo8g02160 783 PANTHER OS01G0519700 PROTEIN 73 747 - -
Pumo8g02160 783 ProSiteProfiles Zinc finger SWIM-type profile. 578 609 IPR007527 GO:0008270
Pumo8g02160 783 MobiDBLite consensus disorder prediction 23 42 - -
Pumo8g02160 783 Pfam MULE transposase domain 296 390 IPR018289 -
Pumo8g02160 783 Pfam FAR1 DNA-binding domain 84 174 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02160 Pumo-Chr8 58683187 58687044 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pumo8g02160 MULE 5.3e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02160 - - ccaj:109811679 951.044