Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02143 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGCAATGGACCACCTGAGAAGCCAGTACTATGCAATGCATGTGGGTCTCGATGGAGGACAAAGGGAACTCTTGCAAATTATACCCCTTTACATGCTCGAGCAGAAACTGATGATTACGAGGATCAAAGGGTTTCCAGGGTAAAGAGCATATCGATAAATAAGAAGAAAGAAGTGGCATTGCTCAAACGAAAACAGAACCATGATAATGTAGTATCTGGAGGGTTTGCACCTGATTACAACCAGGGATACCAAAAGGTTGTAGATGAAGATATAAGCAACCGATCGAGTTCAGGATCAGCTATCTCTAACTCAGAGAGCTGTGCACAATTTGGTTATGGTGGCATGGATGCTAGTGATCTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGTGTTGGTCGTCCAAAGCCTTCTTCTGTTGAGAAGCTAACAAAAGATTTATGTACTATTCTTCATGAACAACAGTCGTATTTTTCGGCATCTTCTGAAGAAGATCTTCTTTTTGAAAGTGATACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCGTTCTCATTAGGCATCCTAGCTATATAGCTCGTGAAGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCCCAATGAGTGAGGCATATTCTTATTCTGGTGCCATTCTAATGCATAATGATTCCAATCGCTTGAAGTCATCATCTCTGAAAGTTGAAAAGATTGGGAACTCTACTGGCCAAGGAATGCAGCAGGAACAACTTAAAAGTGACAAGTCTCAACTTGAAAGAGTACAAATCCTTGGCAATCATGAATCCCCATTGTGCTCAATAGATTTAAATGATGTTGTAAACTATGAAGAGTTTTTGGGAATCTTGACAAATGAAGAGCAACAGCAATTACTGAAGTTACTTCCTGTGGTTGATACTGCTAAACTCCCTGATAGCCTTAAAGTCATGTTCAATAGCTCTCAATTCAAGGAGAACTTAACTTATTTTCAGCAGCTTCTTGCGGAAGGAGTCTTTGATATCTCTTTGTTGGGGGCAAAACCCGAAGACTGCAAGACTTTGAAAAGACTTGCATTATCCAATCTGTCAAAGTCAAAATGGGTAGAACACTATAATTTTCTCAAGAAATGTAAAAACAAAACTGGAAAATCTGATACTACGGGATCTACTGGTACATCAACTAATGTTGTGAACAGCAAGGCATCAACTAATGTTGCAAACATCAAGAGAACGCGTGACAGCAGAAATCAAAACTTTCCAGAATTAAAGACGATAATGAGGAGCCCCAAAAGAATGATCACAAAGGCCGGCTGTGAGGGCAAAGAAGCTGTAGAAGATGGTGCTTGCTATAGCCCAAAAAACCTATTTGCTTTGCCTCCTGATGCTAGCTCTCTCTTGCTGGATTCTTTAAACTTTGTTGAGGAGAGTAGTGATCAGGATCTGCTGCTAGAGGTGCCATCTAACACTTCTTTTCCACAGGCGGAGCTCTTGCATCCAAGTTTAAGCCTTGGTGCTCAAGCCAGCACTAGTAGTAGCTCAGTCTACTCACATCTTGTTCACAATTAA 1653 0.4168 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETDDYEDQRVSRVKSISINKKKEVALLKRKQNHDNVVSGGFAPDYNQGYQKVVDEDISNRSSSGSAISNSESCAQFGYGGMDASDLTGPAQSVVWDAMVPSKKRTCVGRPKPSSVEKLTKDLCTILHEQQSYFSASSEEDLLFESDTPMVSVEIGHGSVLIRHPSYIAREEESEASSLSVDNKQCPMSEAYSYSGAILMHNDSNRLKSSSLKVEKIGNSTGQGMQQEQLKSDKSQLERVQILGNHESPLCSIDLNDVVNYEEFLGILTNEEQQQLLKLLPVVDTAKLPDSLKVMFNSSQFKENLTYFQQLLAEGVFDISLLGAKPEDCKTLKRLALSNLSKSKWVEHYNFLKKCKNKTGKSDTTGSTGTSTNVVNSKASTNVANIKRTRDSRNQNFPELKTIMRSPKRMITKAGCEGKEAVEDGACYSPKNLFALPPDASSLLLDSLNFVEESSDQDLLLEVPSNTSFPQAELLHPSLSLGAQASTSSSSVYSHLVHN 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02143 550 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Pumo8g02143 550 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Pumo8g02143 550 FunFam GATA transcription factor 27 3 85 - -
Pumo8g02143 550 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 297 409 IPR044867 -
Pumo8g02143 550 Gene3D - 3 85 IPR013088 GO:0006355|GO:0008270
Pumo8g02143 550 Gene3D - 287 394 IPR038108 -
Pumo8g02143 550 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Pumo8g02143 550 Pfam Asx homology domain 285 369 IPR028020 -
Pumo8g02143 550 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Pumo8g02143 550 PANTHER OSJNBB0038F03.10 PROTEIN 1 548 IPR044589 -
Pumo8g02143 550 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Pumo8g02143 550 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02143 Pumo-Chr8 58439760 58444964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02143 1 527 C2C2-Gata Transcription Factor Family AT4G17570 54.034 8.87e-166 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo8g02143 ASXH 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02143 - - gmx:100803914 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02143 8 58439760 58444964 Pumo4g01726 4 22734245 22740248 PCT