Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02142 ATGGCAACACCAGTCAGTAACGGTCATTCTAAAGAAGGAAGATATGAGAAGTCATTGATGGAAAATGGGGAACACACTTTCCTCGCTAGGCCCATGTATAAGCGGCGGAAAGTTTCTGCCGTTCGTGATTTCCCAGATGGATGTGGACCATTTGCTTCAAGGATTGATCAAGTGTTAGACGTAAATATTGCGGGTTGTGGTTCTGCTAATGGTACAATTATTGAGGATAAGAATGGTGAACATTTAGGGGGTGATACTGTTAAAACTTCCAATTGTGAAAATGACGGCTGGCATTCTGAAGTGAAAGATTCGCTTCTTACTGAAACTCTTGGCCAAACAACTGACAGTGGTTTGAATAAGGAAAACCCCATAGTCTCATCTCCTCAAGTGAATGGGTCTACAATTGACTGTGGTTTGAATAAGGAAAACCCTGTAGTCTCATCTCATGAAGTGGATGGACCTACTGCTGAAGATGAAGCTGCAAAAGTGACCGTTGACCAAACAACTGACCATGTTTTGAACAAGGAAAACCCTGTGGTCTCATCTCATCAAGTGGATGGGCCTACTGCAGAAGATGAGCATGCAAAAGTGCCATTAGTGGACATGGAAACTTTGAATACAGAGTTTGCAAGAACTGCAAACACTGTAAAATGTGACTCCTCTTATATGTTGAAGTCATCTTCTCAAGCAGGTGAGGTGGTTATGTCAGGTGGCTCAAAACCCTTATTGTCCAATGTCAATATATCTGGTTCCAGTGCTTGCATGGTGGAGCCTGTAACTAGAAGGTATCTTCCTCGAAGAAAAGTTTCAGCTCTCAGAGACTTCCCTGCTTTATGTGGACGCAATGCTCCACATCTCAGGAAGGAGAACGATGTGTGTCTAGAGGGGATCTCTTCTTTGAATAACAAGAAAGTGTGTCAACAGAACCTGGCCATAGATGACAATCCATTGAAAGAAGTAGGAGCCGTGGCCGTAGATGACAGTCCATTGAAAGAAGTAGGAGCCGTGGCCGTAGATGACAGTCCATTGAAAGAAGTAGGAGCCGCTGATGTAAAAGAAATTGAAAGTAGCATCCAAGATGAATATGGTTGCAAGAGAAAGCTTGTGGACATTGTTCAAACTGATTCTGAAAGTAATTCTGCAAAGACAGTGAAGAAGCCACTAGAAATCACGAGAGAAAAGCACATTACACTTCCTGAAGAAAGTAATTGTCATGTTAAAATAAATTCCAAGGCAGTGGTAAAAGAGGGAAATAGGGATGAGACAAAGCCTTTGGATCTATCTCATTCTAAGCATAAGTTGAAAGGAAATTTTAATAGATTGTTGGTCTCATCAGACAGGAAAGTAGTACTAGGTTTGATGGCTGAATCAGAATGTCCTTGGAGGTCTGACAAAGGTTCCTCCAAATTTAAGTTGGGTGATGCTAAAAATGAAGGCAAGAAAAAGAAAGTAACTTTTGCATTGCCTGACAGGTCTAAAACAGCTATCAAGACTAAAGGTGCACGGAATTATTCTGTGCAGAAGCCTTTGAAAAAGAAAAAAAGAATTGCTACTTCTGAAGGTATGGAATCAGTAATTTGGGAAAAGGATAGTCTTGACCCTAATGAAAATAATGAAGACCTTCAAATTGTTCTGAAATCACATGAGTTTGATGTAAATGTTACTCCCTCTTCTCATTCTAATTTCACTGGTGATGAGGATGACTCAAATGTGACCCGAAAAAAAGTGAGGAAAACATTACGGTTATTTCAAGTTATTTGTAGAAAGCTTTTACAGGAAGTAGAATCAAAGATAAATGAGCGAGCAAATGGTAAGAGGGTTGATTTAATTGCTGCAAAGATCCTTAAGGAGAATGGGAATTATGTTAACTCAGGCAAGCAGATACTGGGCGCTGTCCCTGGGGTTGAAGTTGGTGATGAATTTCAATATAGGGTGGAGCTTAATATAGTTGGCCTTCATCGTCATATTCAGAGTGGCATAGATTATGTGAGGCACAATGGTAAGATCCTTGCAACTAGTATTGTTGCGTCAGGGGGCTATGCTGATGATTTGGATAATTCGGATGTCTTGACATATACAGGGCAGGGTGGGAATGTGATGAACTCTGATAAAGAACCTGAAGATCAGAAGCTTGAGCGGGGCAATCTTGCTTTGAAGAACAGTAGTGAGGAAAAGAATCCTGTTAGGGTGATACGTGGCTCTGAATCAATGGATGGAAAGTGCAAGATATATGTTTATGATGGACTGTATGTAGTTGAGTCATGTTGGCAGGATGTGGGACCACATGGGAAGCTGGTTTATAGGTTTCGCCTGCGAAGAATCCCTGGTCAACCAGAGCTTGCTTTGAAGGAAGTGAAGAAATCTAAAAAGTTCAAAACAAGAGAAGGTCTATGTGTTGATGATATTTCTGATGGAAAAGAACGAGTTCCCATATGTGCTGTGAACACCATAGATGATGAAAAACCCCCTCCGTTTAATTACATAACTAGCATGATATACCCCAATTGCCATCCCCTTCCAGCAGAAGGATGTGATTGTACTAATGGATGTTCAGATTTGCAGAAATGTTCATGTGTAGTGAAAAATGGGGGAGAGATTCCATTCAATCACAATGAGGCTATTGTACAAGCAAAGCCTCTAGTCTATGAGTGTGGACCTACTTGTAAATGTCCTTCAACTTGCCATAATAGAGTCAGCCAACTTGGCATAAAGTTTCAACTTGAAATATTTAAAACCGATACAAGGGGATGGGGTGTGAGATCCCTGAATTCAATTCCTTCAGGAAGTTTTATCTGTGAATATATAGGGGAGCTTCTTGAAGACAAGGAAGCTGAACAAAGAACCGGTAATGATGAGTATCTTTTTGATATTGGAAATAACTATAGCAACAGTACTCTTTGGGATGGACTTTCGACTCTCATGCCTGATGCACCCACAACTTCTTGTGAAGAAGTTGTGAAGGATGGTGGTTTCACCATTGACGCTGCTCAGTTTGGTAATGTGGGGAGATTCATTAACCATAGTTGCTCCCCTAATCTTATTGCTCAGAATGTCCTTTATGATCACCATGACACCAGGATGCCTCACATAATGTTCTTTGCTGCTGATAACATTCCTCCCTTGCAAGAGCTGACTTATGATTACAATTATGAAATAGATCAAGTCCGTGATTCTGATGGCAATATAAAAAAGAAGTATTGCTATTGTGGTTCTGTGGAATGTACTGGTAGGATGTATTGA 3240 0.4068 MATPVSNGHSKEGRYEKSLMENGEHTFLARPMYKRRKVSAVRDFPDGCGPFASRIDQVLDVNIAGCGSANGTIIEDKNGEHLGGDTVKTSNCENDGWHSEVKDSLLTETLGQTTDSGLNKENPIVSSPQVNGSTIDCGLNKENPVVSSHEVDGPTAEDEAAKVTVDQTTDHVLNKENPVVSSHQVDGPTAEDEHAKVPLVDMETLNTEFARTANTVKCDSSYMLKSSSQAGEVVMSGGSKPLLSNVNISGSSACMVEPVTRRYLPRRKVSALRDFPALCGRNAPHLRKENDVCLEGISSLNNKKVCQQNLAIDDNPLKEVGAVAVDDSPLKEVGAVAVDDSPLKEVGAADVKEIESSIQDEYGCKRKLVDIVQTDSESNSAKTVKKPLEITREKHITLPEESNCHVKINSKAVVKEGNRDETKPLDLSHSKHKLKGNFNRLLVSSDRKVVLGLMAESECPWRSDKGSSKFKLGDAKNEGKKKKVTFALPDRSKTAIKTKGARNYSVQKPLKKKKRIATSEGMESVIWEKDSLDPNENNEDLQIVLKSHEFDVNVTPSSHSNFTGDEDDSNVTRKKVRKTLRLFQVICRKLLQEVESKINERANGKRVDLIAAKILKENGNYVNSGKQILGAVPGVEVGDEFQYRVELNIVGLHRHIQSGIDYVRHNGKILATSIVASGGYADDLDNSDVLTYTGQGGNVMNSDKEPEDQKLERGNLALKNSSEEKNPVRVIRGSESMDGKCKIYVYDGLYVVESCWQDVGPHGKLVYRFRLRRIPGQPELALKEVKKSKKFKTREGLCVDDISDGKERVPICAVNTIDDEKPPPFNYITSMIYPNCHPLPAEGCDCTNGCSDLQKCSCVVKNGGEIPFNHNEAIVQAKPLVYECGPTCKCPSTCHNRVSQLGIKFQLEIFKTDTRGWGVRSLNSIPSGSFICEYIGELLEDKEAEQRTGNDEYLFDIGNNYSNSTLWDGLSTLMPDAPTTSCEEVVKDGGFTIDAAQFGNVGRFINHSCSPNLIAQNVLYDHHDTRMPHIMFFAADNIPPLQELTYDYNYEIDQVRDSDGNIKKKYCYCGSVECTGRMY 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02142 1079 SMART preset_2 799 889 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo8g02142 1079 SMART G9a_1 625 777 IPR003105 -
Pumo8g02142 1079 CDD SET_AtSUVH-like 823 1050 - -
Pumo8g02142 1079 ProSiteProfiles YDG domain profile. 630 773 IPR003105 -
Pumo8g02142 1079 Pfam Pre-SET motif 802 897 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo8g02142 1079 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 486 1079 IPR025794 GO:0016571
Pumo8g02142 1079 ProSiteProfiles Pre-SET domain profile. 842 902 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo8g02142 1079 MobiDBLite consensus disorder prediction 113 132 - -
Pumo8g02142 1079 Gene3D SET domain 794 1079 IPR046341 -
Pumo8g02142 1079 SMART set_7 905 1055 IPR001214 GO:0005515
Pumo8g02142 1079 Pfam SET domain 916 1049 IPR001214 GO:0005515
Pumo8g02142 1079 ProSiteProfiles SET domain profile. 905 1049 IPR001214 GO:0005515
Pumo8g02142 1079 Pfam SAD/SRA domain 629 777 IPR003105 -
Pumo8g02142 1079 Gene3D - 612 793 IPR036987 -
Pumo8g02142 1079 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 461 1072 - -
Pumo8g02142 1079 ProSiteProfiles Post-SET domain profile. 1063 1079 IPR003616 -
Pumo8g02142 1079 SUPERFAMILY PUA domain-like 613 786 IPR015947 -
Pumo8g02142 1079 SUPERFAMILY SET domain 789 1055 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02142 Pumo-Chr8 58434139 58437378 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02142 567 1076 Su(var)3-9 homologs AT5G04940 41.366 6.28e-120 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo8g02142 SAD_SRA 2.6e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02142 K11420 - gmx:100803378 1901.33