Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02135 ATGAATCCATGGAACCTGAGAACTTCCAAGTTACTCTCTCAACAAGTTGCTTACCCTTCTCATCTCTTTGTAGAAGAGATTCCTAACATGGCAAATTCCAGTGGTGTGACCAAGGAGGCTAGAGGTTCACAGATGACAATCTTTTATGGTGGCCAAGTTCTTGTCTTTGATGATATTCAAGCTGACAAAGCCAAGGACATCATGTCTTTTGCCAGCAAAGGAGTGTCTCAGAACCAGAACGACTATGCTTACACATTCCCTGCTACAACTTCTGCTACTCCCACTAGACCATTCCCTTTTCTTATGAATAGCATCCCTACCACCGCCATCAATTCGGTTCAAGACCACCCTCAAGCACCATCCAAGCCTGTTATTTGTGATCTACCATTGGCTAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGAATTGCTGCCAGAGCACCATATCAAACAAGCAATCACATGGCAGCCCTTAATAAGCCAGCTGAATCCATGCCATGGCTCACCTTGGCACCTAAATCACCAGAAGAGGAATCTGATTCTGATAGCAGCTCCAGCTTTGTGTTATTTTAA 585 0.441 MNPWNLRTSKLLSQQVAYPSHLFVEEIPNMANSSGVTKEARGSQMTIFYGGQVLVFDDIQADKAKDIMSFASKGVSQNQNDYAYTFPATTSATPTRPFPFLMNSIPTTAINSVQDHPQAPSKPVICDLPLARKASLHRFLEKRKDRIAARAPYQTSNHMAALNKPAESMPWLTLAPKSPEEESDSDSSSSFVLF 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02135 194 ProSiteProfiles Tify domain profile. 38 73 IPR010399 -
Pumo8g02135 194 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 30 175 IPR040390 -
Pumo8g02135 194 SMART tify_2 38 73 IPR010399 -
Pumo8g02135 194 Pfam Jas motif 129 154 IPR018467 -
Pumo8g02135 194 MobiDBLite consensus disorder prediction 171 194 - -
Pumo8g02135 194 Pfam tify domain 41 72 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02135 Pumo-Chr8 58370249 58372028 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02135 25 175 Tify Gene Family AT1G19180 36.709 5.33e-26 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pumo8g02135 tify 1.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02135 K13464 - gmx:100306332 324.324