Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02125 ATGGCCGTTCAAGCTCAATATCCCTCCAATGTACTCTTCCTAAACAGCAAAACCGGGCAAGAAGCACATGATTATTCATTGCAATCTCCGCCAGGAGAACTCCTTGATCAATCCCATATGCTATTCAACAACGGAGGTACTAATTCTCGAAAGAGAGGAAGAGAAACAACAACAGCAGCTACCGCACTTGCGCCAAACGTTATCAATTCATTCTCTTTGCAATCCCAATCTCCACAGCTCATAGACCTTACCCAACTCCATAATCAAAATGTAGTCTCCACCGGGTTACGCTTATCCTTTGGTGACCAACAACAACAACAAAGACAACAATTACAACATCATCATCAACAACAACAACAACAACAACAACATGGGTGTCACTCCTCTCCTTTCGTATCTCTATTATCCGAAGGGTTGTCCTCTCAAATCAAACAACAGCGTGACGAAATAGACCAATTCCTTCATGCCCAGGGGGAACAATTACGGCGGGCATTAGCGGAGAAGAGGCAGAGGCTTTATCGGACGCTGCTAAGGGCAGCGGAGGAATCAGTGTTGCGGAGGCTGAGGGAGAAGGAAGCGGAGGTGGAGAAAGCGACGCGCCGTAACGCGGAGCTGGAGGCACGCGCGGCGCAGCTTAGCGCGGAGGCGCAGATTTGGCAGGCGAATGCGAAGGCACAGGAGGCCACGGCGGCGTCGTTGCAGGCGCAGCTGCAGCAGGCTATGATGAGCAGCGGTGAGGACGGAGGGCTATCGTGCGCCGGGGGCGAAGCGGAGGATGCTGAGTCAGCATACGTGGACCCGGAGCGAGTGGGTCCCAAATGTAGAGGGTGTGCGAAACGGGTGGCTTCGGTGGTGGTGTTGCCGTGTCGCCACCTATGCATCTGCGCCGAATGCGACAGGCATTTCCGGGCCTGCCCCGTTTGCCTCACCGTTAAAAATTCAACCGTTGAAGTCTGTCTATCTTAG 966 0.529 MAVQAQYPSNVLFLNSKTGQEAHDYSLQSPPGELLDQSHMLFNNGGTNSRKRGRETTTAATALAPNVINSFSLQSQSPQLIDLTQLHNQNVVSTGLRLSFGDQQQQQRQQLQHHHQQQQQQQQHGCHSSPFVSLLSEGLSSQIKQQRDEIDQFLHAQGEQLRRALAEKRQRLYRTLLRAAEESVLRRLREKEAEVEKATRRNAELEARAAQLSAEAQIWQANAKAQEATAASLQAQLQQAMMSSGEDGGLSCAGGEAEDAESAYVDPERVGPKCRGCAKRVASVVVLPCRHLCICAECDRHFRACPVCLTVKNSTVEVCLS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02125 321 ProSiteProfiles Zinc finger RING-type profile. 274 308 IPR001841 -
Pumo8g02125 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 321 IPR013083 -
Pumo8g02125 321 Pfam Zinc finger, C3HC4 type (RING finger) 273 310 - -
Pumo8g02125 321 MobiDBLite consensus disorder prediction 22 55 - -
Pumo8g02125 321 MobiDBLite consensus disorder prediction 102 129 - -
Pumo8g02125 321 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 43 318 IPR017066 -
Pumo8g02125 321 MobiDBLite consensus disorder prediction 40 55 - -
Pumo8g02125 321 Coils Coil 178 243 - -
Pumo8g02125 321 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 259 320 - -
Pumo8g02125 321 PIRSF SBP1_RNase_bind 1 321 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02125 Pumo-Chr8 58262989 58265626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02125 204 308 C3H Transcription Factor Family AT3G06140 25.781 6.85e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02125 K19042 - gmx:100779548 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02125 8 58262989 58265626 Pumo8g02125 8 58262989 58265626 ECH
Pumo8g02125 8 58262989 58265626 Pumo4g01763 4 23179176 23179586 PCT