Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02110 ATGGCGCTTTATCTTTTCTGTCGTCTTCTTGCTATCACCTTGATTTTCATGCAAACTCTGGCAGATACTTCATGCACCAATTGTTTCATTCATTCTCGGGCAGCATATTATCCAAATTCTGAAGAACAGGGAACAGATGTAGGTGCATGTGGGTTTGGTTCCTTTGGTGCTACGGTCAATGGCGGGGATGTATCAGCTGCATCTTCTCTTTATCGAAATGGTGTTGGTTGTGGCGCCTGTTACCAGGTGAGGTGTACCAACAGTGCCTATTGCTCAGAAAATGGTGTCACTGCAGTTATAACCGACCAAGGTTCAAGTGATAACACTGATTTCATTCTTAGCAAACATGCCTTTAGCCGGATGGCTCAAACCACTGATGCAGCTGCTTCTCTACTAGCCCTTGGCGTGGTTGATATTGAATATAGACGCGTTGCATGCAGCTACCCAGATAAAAACATAACAATCAAGATAGATGAGAGCAGCAACAACCCTTATTACTTGGCTTTTGTCATTTGGTATCAACAAGGAAGCAGAGACATAACTTCTGTGCAGCTCTGTGAGACTCAAAACTTTGTGTGCAAGTTACTGGATCGGAGCCATGGGGCAGTGTGGACTTCTAGCCCTCCACCAAGTGGACCTTTGTCTTTAAGGATGTTGTTTAGTGATGAAGAAGAGGGAGAAGAAACGTGGGTTGTTCCTGTTAATAACATACCCGGAGACTGGAAGGCTGGTGAAACATACGATACAGGGGTACAAGTGAACCAATAG 768 0.4466 MALYLFCRLLAITLIFMQTLADTSCTNCFIHSRAAYYPNSEEQGTDVGACGFGSFGATVNGGDVSAASSLYRNGVGCGACYQVRCTNSAYCSENGVTAVITDQGSSDNTDFILSKHAFSRMAQTTDAAASLLALGVVDIEYRRVACSYPDKNITIKIDESSNNPYYLAFVIWYQQGSRDITSVQLCETQNFVCKLLDRSHGAVWTSSPPPSGPLSLRMLFSDEEEGEETWVVPVNNIPGDWKAGETYDTGVQVNQ 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02110 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 249 IPR007117 -
Pumo8g02110 255 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Pumo8g02110 255 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Pumo8g02110 255 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Pumo8g02110 255 SUPERFAMILY Barwin-like endoglucanases 19 150 IPR036908 -
Pumo8g02110 255 Gene3D - 148 253 IPR036749 -
Pumo8g02110 255 PANTHER EXPANSIN-B3 16 252 - -
Pumo8g02110 255 Pfam Expansin C-terminal domain 153 232 IPR007117 -
Pumo8g02110 255 SUPERFAMILY PHL pollen allergen 151 248 IPR036749 -
Pumo8g02110 255 CDD DPBB_EXLB_N 30 146 - -
Pumo8g02110 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Pumo8g02110 255 Pfam Lytic transglycolase 67 141 IPR009009 -
Pumo8g02110 255 Gene3D - 17 147 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02110 Pumo-Chr8 58077481 58079596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02110 1 251 Expansin Gene Family AT4G17030 40.873 1.41e-57 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02110 - - gmx:100794009 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02110 8 58077481 58079596 Pumo4g01771 4 23335981 23337825 PCT