Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02101 ATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTCCCAAAGGGGCTTAGAGTTCTTCTGCTTGAAGGAGATAGTAGTTCTGCTGCTGAGATAAGAGAACAGCTTGAGGCCATGGACTATAATGTTTCTACTTTCTACAATGAGAATGATGCCTTGTCAGCAATCTCGAGTAGTCCTGAAGGCTTCCATGTTGCCATAGTGGAGGTGAGTACAAGCTGTAGCCTTGGAGGTTTCAAATTTCTTGAGAATGCAAAGGACTTGCCTACCATCAGTAAGCACAGAACCAAGCCCAACTTCTCTGGTTTAAATTCTTTGACTTCTAAGGACCAGTGCCTGAACACCATGATGAAGTGCATTGCGCTTGGTGCAGTTGAGTTTCTCAGCAAACCACTCTCTGAGGACAAGCTCAAAAATATTTGGCAGCATGTTGTTCACAAGGCATTTAATGCTGGGGCAAATGTCGTTTCTGAATCACTAAAACCTGTCAAAGAATCTGTAGAATCCATGCTGCAGCTCCAAACAGACAATGGACAAGATAAAAGTAGGATTTCAATTGATTTAGAGAATGTGTCGAGGTTTAGTGATAATGACCATGAGCAGTCTGCTGTATGTGATAAATATCCGGCTCCATCAACCCCTCAATTAAAACAAGGGACAAGGTTACTGGATGATGGAGATTGCCATGAGCAGACTAATTGCTCAACAGAAAAAGAAAGTGGGGAACATGATGGGGAATGTAAATCTGTCGAAACTTCATGTGAGAATTTGAATGCTGAAAGTTCTCCTCAACCAAGGGAACCTGAGAAGACTCTGATTAAGGAGGAAGTGGATTTTGCCAATGGTTCCAAGGGTGAGAGCGCTGTTTCACTGAGTCCACATAATAAAAAGTTTCTCAGCAATGCCGATGGTAATACATCTCCAAATAAAACGGGTGTACTTAATGATTCATGTGAGATTAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCTGAGCTGCATAAAAAATTTGTAAAGGCTGTTGAACAACTAGGTATTGATCAAGCCATTCCTTCTAGAATATTGGAGATAATGAAAGTGGAAGGTCTGACAAGGCACAATGTGGCAAGCCATCTTCAGAAATATAGAATACACAAGAGACAAAGTACACCCGGGGAAGAAGATCGAAAATGGCATAATCAAAGAGATGCAATGCAAAGGAACTATTATATGCAAAGACCAATCATGGCCTACCCTCCATATCATTCTAATCACACCCTTTCTCCAGCTCCTATATATCCTATGTGGGGACAACCTGGTAGTCAAACAGCTGGTGTACAGATTTGGGGCCATCCTGGCTATCCTTTGTGGCATCCTACAGAAAGTTGGCACTGGAAGCCTTATCCTGGGGTGCATGTGGATGCTTGGGGATGCCCACTGTTGCCACCTCCTCAAGCTCCTTGTTTTCCCTACAACCAACAGAATATACCTGGATTGCACAATCCTAAAGCAGTGGATTATAGATTCAGCATGCCTCGAAGTTCCTTTGAGCATCATCCGGCAGAGGAGGTGGTAGACAAGGTTGTGAAGGAAGCAATTAGCAAGCCATGGCTACCATTGCCCTTAGGACTCAAACCTCCTTCCATGGATAGTGTGTTGGCTGAGCTCTCCAAACAAGGAGTATCCAGCATCCCTCTTGGCAACAAGGGTTCTTCTACTCCTAAACTCTGCTGA 1722 0.4344 MVCTANDLQGWKDFPKGLRVLLLEGDSSSAAEIREQLEAMDYNVSTFYNENDALSAISSSPEGFHVAIVEVSTSCSLGGFKFLENAKDLPTISKHRTKPNFSGLNSLTSKDQCLNTMMKCIALGAVEFLSKPLSEDKLKNIWQHVVHKAFNAGANVVSESLKPVKESVESMLQLQTDNGQDKSRISIDLENVSRFSDNDHEQSAVCDKYPAPSTPQLKQGTRLLDDGDCHEQTNCSTEKESGEHDGECKSVETSCENLNAESSPQPREPEKTLIKEEVDFANGSKGESAVSLSPHNKKFLSNADGNTSPNKTGVLNDSCEIKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKYRIHKRQSTPGEEDRKWHNQRDAMQRNYYMQRPIMAYPPYHSNHTLSPAPIYPMWGQPGSQTAGVQIWGHPGYPLWHPTESWHWKPYPGVHVDAWGCPLLPPPQAPCFPYNQQNIPGLHNPKAVDYRFSMPRSSFEHHPAEEVVDKVVKEAISKPWLPLPLGLKPPSMDSVLAELSKQGVSSIPLGNKGSSTPKLC 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02101 573 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 561 IPR044825 GO:0003700|GO:0045893
Pumo8g02101 573 FunFam Two-component response regulator-like APRR2 17 157 - -
Pumo8g02101 573 NCBIfam myb-like DNA-binding domain, SHAQKYF class 327 382 IPR006447 GO:0003677
Pumo8g02101 573 Gene3D - 323 384 - -
Pumo8g02101 573 Pfam Myb-like DNA-binding domain 330 379 IPR001005 -
Pumo8g02101 573 SUPERFAMILY CheY-like 16 148 IPR011006 -
Pumo8g02101 573 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 324 383 IPR017930 -
Pumo8g02101 573 Gene3D - 18 156 - -
Pumo8g02101 573 SUPERFAMILY Homeodomain-like 326 383 IPR009057 -
Pumo8g02101 573 FunFam Two-component response regulator 323 386 - -
Pumo8g02101 573 ProSiteProfiles Response regulatory domain profile. 19 146 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02101 Pumo-Chr8 57996325 58002706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02101 1 561 Response Regulator Gene Family AT4G18020 47.885 9.88e-140 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pumo8g02101 Myb_DNA-binding 2.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02101 - - gmx:100784905 1052.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02101 8 57996325 58002706 Pumo4g01782 4 23443033 23450065 PCT