Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02090 ATGATTGAGCTGAAAAAGTTCAAGATGGAAAAGGAGGAGAATGGAAAACTGAAGACGGAGACAGAGGCGGCTGAGGAGCTTGACGACCCAACCATGATGAGGCTCTCAGAATTGGAGAATGCCTTGAGAAAGGCTAGTGGTCAAATGGACCAAGCAACTGCAGCTGTCAGAAAACTTGAGGGGGAGAAAGCTGAAATCAAAGCTGAGTTAGAGGCCTCTAAATTAAGTGCATCAGAGTCAGTCGCAAGCTGCTTGCAAGTTGCAAAAAGGGAGAAAAGGTGCTTAAAGAAGCTTCTGGCTTGGGAAAAACAGAAAGCGAAGATACAACAGGATATTTCAGATGAAAAACAGAAGATATTGGAGATACAAGAAGAATTGGCTCAGACTAAACAGTGTGCAAAGGAAACCGAGGTCACGAGGATGGAAGAGTTGAAGGCTAAGGAGGAAGCCTTAGCACTAATTGAAGAGGAACGCCGTTCTAAGGAAGCAGCTGAGGCTAATCAAAAAAGAAATCTTAAGGCTTTACGCCTGAAGATAGAGATAGATTTCCAGCGTCGTAAGGATGATCTCCTTAGGCTTGAGCAGGAGATTTCGCGCCTTAAAGCACCTGCACGGTCTACTACTTTTCCTACAAGTGAGTCTGAGGATGCAGAGCCCCAGAGAGAGACACTTGCTAAGCTTCTGCAAGAGTTAGATAACGTGAAGGATTTTTCAGGAAAAGAAGTCAACGGTAACAGAGAATGCATTATATGTGGAAAAGATGAAGTTTCCGTTCTTTTCTTGCCATGCGCACACCAAGTTATGTGTGCTAGTTGCGGTAAAGAGTATGGGAAAAAGGGTAAAGCTGTTTGTCCATGCTGCCGGGTTCCAATCGAAGAGAGAATTCCTATATTTGGGGCAAGCTCGTAG 909 0.4455 MIELKKFKMEKEENGKLKTETEAAEELDDPTMMRLSELENALRKASGQMDQATAAVRKLEGEKAEIKAELEASKLSASESVASCLQVAKREKRCLKKLLAWEKQKAKIQQDISDEKQKILEIQEELAQTKQCAKETEVTRMEELKAKEEALALIEEERRSKEAAEANQKRNLKALRLKIEIDFQRRKDDLLRLEQEISRLKAPARSTTFPTSESEDAEPQRETLAKLLQELDNVKDFSGKEVNGNRECIICGKDEVSVLFLPCAHQVMCASCGKEYGKKGKAVCPCCRVPIEERIPIFGASS 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02090 302 Coils Coil 35 76 - -
Pumo8g02090 302 Pfam Zinc finger, C3HC4 type (RING finger) 245 293 - -
Pumo8g02090 302 Coils Coil 144 167 - -
Pumo8g02090 302 Coils Coil 98 125 - -
Pumo8g02090 302 CDD RING-HC_MIP1-like 246 295 - -
Pumo8g02090 302 SUPERFAMILY RING/U-box 231 295 - -
Pumo8g02090 302 PANTHER OS05G0141500 PROTEIN 3 296 IPR046934 -
Pumo8g02090 302 ProSiteProfiles Zinc finger RING-type profile. 248 288 IPR001841 -
Pumo8g02090 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 299 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02090 Pumo-Chr8 57847752 57849712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02090 248 298 C3H Transcription Factor Family AT1G73950 43.137 1.67e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02090 - - gmx:100789166 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02090 8 57847752 57849712 Pumo4g01797 4 24162428 24169092 PCT