Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02088 ATGCCAGTTCCACTTGCCCCCTACCCTCCACCCCTTCCACCAGCTCCATATACGCCTCCACCACATGGTGCGCAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTGCTCTATCCAGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACAACAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGTGGAGGCTGTCACACTTTCCTCATGTACATCCGTGGAGCCACAAGTGTGCAATGCTCTTGTTGTCACACGGTCAATCTAGCTTTGGAAGATAATTTTCTGCCTGTTGAAAACCAAAGGTCAACGTCAAAGTACGGCTACCCAATATAG 354 0.5056 MPVPLAPYPPPLPPAPYTPPPHGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPGTEMAQLVCGGCHTFLMYIRGATSVQCSCCHTVNLALEDNFLPVENQRSTSKYGYPI 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02088 117 NCBIfam zinc finger domain, LSD1 subclass 27 57 IPR005735 -
Pumo8g02088 117 NCBIfam zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Pumo8g02088 117 Pfam LSD1 zinc finger 30 54 IPR005735 -
Pumo8g02088 117 Pfam LSD1 zinc finger 69 93 IPR005735 -
Pumo8g02088 117 PANTHER PROTEIN LSD1 17 57 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02088 Pumo-Chr8 57833992 57836802 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pumo8g02088 zf-LSD1 6.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02088 - - gmx:100788563 174.096