Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02085 ATGGATTCTAGTGAACACCCTCAGCCTCAGCCACAACCGCCAAACATGATGGTAGGACCCACCGTCTACCCTTCCATGTTGGCCCCAGCCACCGCCCGATTCCCCTTCGGCAACACCAACCCTCCCCCTCCACCCGAGCCTCTCAATAACAACGATACCAACACCAACAATAACAGCCAGGCGTTGAGGCCTTGCGCCACCTCAGAGTCCTCCAAAAAGAAACGGGGCCGCCCCAGAAAATACTCTCCCAACGGCAATATTGCATTGGGTCTGGGCCCCACACAGGCTCCCGCTTCTTCCGCCCAGCCTCCTGCCAAAAAGCACCGCGGTCGCCCACCTGGCTCCGGAAAAAAGCAAATGGACGCTCTCGGAATTCCTGGAACTGGTTTCACTCCCCATATTATCACGGCCGAAGCTGGCGAGGACATTGCAGCAAAAGTCATGGCCTTTTGTGAGCAAGCACCTCGGACAGTTTGCATTCTTTCTACTACTGGTGCAATCCGCAGTGTGACCGTCCGAGCGCCAGCCATGCCTGCGGGTACTGTGGCCTATGAGGGTCAATTTGAGATTTTATCACTTACGCTACAATCTGACAACAATAGCGGTCATAACAGAATGGGTGACTTGAAAGTGAGTTTTGCAGGTCCTGATGCACAAGTATTGGGTGGTGAAGTTGTTGGTGCGCTTACTGCAGCAACGGCAGTGCAGGTCATTCTGGGTAGCTTTATTGCTGATGGAAAAAAGTCTGGCTCAAGTAACCTGAAATCTGGACAATCTTCGGCGCCATCATCCCAGATGTTAACCTTTGGTGCTTCTCCAACTCCAACTACTCCTACCTCTCAAGGGCCTTCGACTGAGTCATCTGAGGATAATGAGAATAGTCATTTGAGTAAGGGGCCAGGAGGCCCAGGACTCTACAACAATGCTAGTCAGCAGCAGCCCATTCATAACATGCCGATGTACCATCAACTATGGACTGGCCAAACTCAGCAGTGA 996 0.5251 MDSSEHPQPQPQPPNMMVGPTVYPSMLAPATARFPFGNTNPPPPPEPLNNNDTNTNNNSQALRPCATSESSKKKRGRPRKYSPNGNIALGLGPTQAPASSAQPPAKKHRGRPPGSGKKQMDALGIPGTGFTPHIITAEAGEDIAAKVMAFCEQAPRTVCILSTTGAIRSVTVRAPAMPAGTVAYEGQFEILSLTLQSDNNSGHNRMGDLKVSFAGPDAQVLGGEVVGALTAATAVQVILGSFIADGKKSGSSNLKSGQSSAPSSQMLTFGASPTPTTPTSQGPSTESSEDNENSHLSKGPGGPGLYNNASQQQPIHNMPMYHQLWTGQTQQ 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02085 331 MobiDBLite consensus disorder prediction 248 290 - -
Pumo8g02085 331 MobiDBLite consensus disorder prediction 304 331 - -
Pumo8g02085 331 Gene3D - 132 256 - -
Pumo8g02085 331 ProSiteProfiles PPC domain profile profile. 127 264 IPR005175 -
Pumo8g02085 331 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 243 - -
Pumo8g02085 331 MobiDBLite consensus disorder prediction 248 331 - -
Pumo8g02085 331 MobiDBLite consensus disorder prediction 50 67 - -
Pumo8g02085 331 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 40 294 IPR039605 GO:0003680
Pumo8g02085 331 MobiDBLite consensus disorder prediction 1 124 - -
Pumo8g02085 331 CDD DUF296 131 242 IPR005175 -
Pumo8g02085 331 Pfam Plants and Prokaryotes Conserved (PCC) domain 132 242 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02085 Pumo-Chr8 57804069 57808192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02085 60 331 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 40.683 9.90e-63 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02085 - - gmx:100788026 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02085 8 57804069 57808192 Pumo4g01804 4 24228835 24234790 PCT