Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02082 ATGTGGAACCCTAGGGAGCAACAACAGCAGGTAGAAGATGATGATGACTCTTGGGAGGTCAGAGCTTTTGCAGAAGACACAAGGAACATCATGGGCACCACATGGCCTCCTAGGTCCTACACCTGCACCTTCTGCAGAAGGGAGTTTCGCTCCGCCCAAGCCCTCGGCGGCCACATGAACGTCCACCGCCGCGACCGCGCCCGCCTCAACCAAGCTCCACCCTCCTCCAACCCCACCTCTTCTCTTCCCACTACTTCACCCTTCATCAATATCCCTCCTCAAGACCTTGTTGCAAATGCTGGATTGTGCCTCCTCTACCACTTGCCCACAAGCCCTAGTGCACCACCCTTCCCTTCCCCCACTACTCCCTCTCCCTCCACTCTTCTCTCTATCTCTTCCTATCCTCCAAACAACTTTCTGATGCAAACTTCCTTTAATTTTCCCGGTGCACCCGCAACCGGGATCAATAATAATAGTACTACCGTTTCCTCTTTGTGCTATAACTCTAGCAAAGTGGAACAATCCGCAACTTCTTCCTCTATTGATAATGGCCACCTTGAAGAGCTTGATCTAGAGCTCCGCCTCGGGCACAAACCAACACCAACCTCATAA 612 0.5229 MWNPREQQQQVEDDDDSWEVRAFAEDTRNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLNQAPPSSNPTSSLPTTSPFINIPPQDLVANAGLCLLYHLPTSPSAPPFPSPTTPSPSTLLSISSYPPNNFLMQTSFNFPGAPATGINNNSTTVSSLCYNSSKVEQSATSSSIDNGHLEELDLELRLGHKPTPTS 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02082 203 Gene3D Classic Zinc Finger 31 82 - -
Pumo8g02082 203 PANTHER OS07G0101800 PROTEIN 12 199 - -
Pumo8g02082 203 SMART c2h2final6 40 62 IPR013087 -
Pumo8g02082 203 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Pumo8g02082 203 Pfam C2H2-type zinc finger 40 64 - -
Pumo8g02082 203 SUPERFAMILY beta-beta-alpha zinc fingers 37 67 IPR036236 -
Pumo8g02082 203 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02082 Pumo-Chr8 57753228 57754503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02082 1 199 C2H2 Transcription Factor Family AT4G17810 43.137 4.27e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo8g02082 zf-C2H2_6 4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02082 - - gmx:100818142 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02082 8 57753228 57754503 Pumo8g02082 8 57753228 57754503 ECH
Pumo8g02082 8 57753228 57754503 Pumo4g01807 4 24290050 24291263 PCT