Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02077 ATGGACGCATCAGAAGCCAGCTGGTTATCTGATTTGCTGTTGCAGGAAACGGAGGATTGCAACTTGTTCCGACAATGTCACCTTGAGTTGCTTGACGATGATGAAGAGTTACTTTCGCATGAGACATTAGCAAGTGCCTTTGAGAACTTGCAGCAACCTTTGTCTTCGGAGAGTCACATTTCTTATTCGGAAACTCTTATGAGCTCATTCACGGACGAAACCAGTTTTGAGAGGCCCACCAAGCAGCCCAAAACGAATGCCTCTAGTTGGAACTCATCATCATCCACCACAACAACCACTAAGCATTTTTTCTCATCTTCCTCCCCTTCTTCTTCTTCTTCTTCTTCTCCAACCTCCAAGATTCTGTCTTTCGACAACTCAAACACTCATGGGATTGTTTCTGCTGCCTTAAGCCCAAAACAGAAGAACAAAGGTGCTTCAGAAACTGAAAGCCCCAAAGGCCAAAGCCAAAGAAGCTACAAGTCCCCCTCTCACGCTCGGGATCACATCATCGCCGAGAGAAAACGAAGAGAGAACATCAGCCAGAGCTTAATTGCTCTAGCAGCTCTTATTCCAGGCTTAAAGAAGATGGACAAGGCTACAGTGCTGAGAGACGCTATCGAGTACGTGAAAGAGCTCCAAGAGCGTTTGAGAATGCTTGAAGAAGAGAACAAGAACAGAGATGTGGAGTCTGTGGTGATGGTGAACAAACCACGTGAAGATGAAGGTGGCAGTGGTAGTAGGGAAAGGCTTCCCCGCGTGGAAGCAAGAGTGTCAGAGAAGGACGTGCTCCTTCGGATCCACTGCCAAAAGCAAAAGGGGCTTTTGCTCAAAATACTTGTCGAGATTCAAAACCTTCATCTCTTTGTTGTCAATAGCAGTGTCCTACCTTTTGGGGATTCCGTACTTGACATAACAATTGTTGCTCAGGTAAACAAATACATATATAAATAG 954 0.4549 MDASEASWLSDLLLQETEDCNLFRQCHLELLDDDEELLSHETLASAFENLQQPLSSESHISYSETLMSSFTDETSFERPTKQPKTNASSWNSSSSTTTTTKHFFSSSSPSSSSSSSPTSKILSFDNSNTHGIVSAALSPKQKNKGASETESPKGQSQRSYKSPSHARDHIIAERKRRENISQSLIALAALIPGLKKMDKATVLRDAIEYVKELQERLRMLEEENKNRDVESVVMVNKPREDEGGSGSRERLPRVEARVSEKDVLLRIHCQKQKGLLLKILVEIQNLHLFVVNSSVLPFGDSVLDITIVAQVNKYIYK 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02077 317 SMART finulus 170 219 IPR011598 GO:0046983
Pumo8g02077 317 PANTHER BHLH TRANSCRIPTION FACTOR 51 313 - -
Pumo8g02077 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Pumo8g02077 317 Coils Coil 203 230 - -
Pumo8g02077 317 MobiDBLite consensus disorder prediction 71 123 - -
Pumo8g02077 317 Gene3D - 164 233 IPR036638 GO:0046983
Pumo8g02077 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 225 IPR036638 GO:0046983
Pumo8g02077 317 Pfam Helix-loop-helix DNA-binding domain 169 214 IPR011598 GO:0046983
Pumo8g02077 317 MobiDBLite consensus disorder prediction 135 161 - -
Pumo8g02077 317 MobiDBLite consensus disorder prediction 135 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02077 Pumo-Chr8 57703192 57705350 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02077 81 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.230 1.71e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo8g02077 HLH 6.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02077 - - gmx:100816551 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02077 8 57703192 57705350 Pumo4g01811 4 24383179 24385215 PCT