Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02076 ATGAGCAATTCCTCAGACGATCATGATAAAATCTTTGGTAAGAGACCAGCGAAGACACTCAAGAATATTGGCACTTCAAACTCAGCTAACGAGGAGTATCTCTCAGAAAAGAAGGATTCTACTCCCTCCTACATTATTTTCTTCGACAATGTGAATCAAGCAGCACCAATGTTGCCAAAAGGCAAGGTTGTGCATCACGGGAGAAAGGGGTCCTTGGAAAATCAAAAGAAGGAACCTAGTCCTAGACATAATGTTGAGAAGAAGAACAAGTGTCCTCAATATGCTAAAGATCACATAATTGCTGAGAGAATAAGGAGAGAAAGGATTAGCCAGCAGTTCGTAGCTCTTTCAGCCCTTATTCCAGGCCTGAAGAAGACGGACAAGGCCTCGGTGCTTGGGGACGCTATAAAGCACGTGAAACAGCTCCAAGAGCAAGTGAAGCTACTGGAAGAGAAGAACAAAAGGAAAAGGGTGGTAGAATCCGTGGTATATGTTGAGAAATCTAAGTTCTCCGCAGCAGAAGATGATGTCTTAGACACTTCTGGGGAAGGAAGCTCCATGACCCTTCAAAAACAAATGAATCATTTCCCGAAGTTGAGGCAAGGGTGTCAGAGAAGCACGTGCTGA 627 0.4402 MSNSSDDHDKIFGKRPAKTLKNIGTSNSANEEYLSEKKDSTPSYIIFFDNVNQAAPMLPKGKVVHHGRKGSLENQKKEPSPRHNVEKKNKCPQYAKDHIIAERIRRERISQQFVALSALIPGLKKTDKASVLGDAIKHVKQLQEQVKLLEEKNKRKRVVESVVYVEKSKFSAAEDDVLDTSGEGSSMTLQKQMNHFPKLRQGCQRSTC 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02076 208 MobiDBLite consensus disorder prediction 66 89 - -
Pumo8g02076 208 MobiDBLite consensus disorder prediction 1 36 - -
Pumo8g02076 208 MobiDBLite consensus disorder prediction 62 89 - -
Pumo8g02076 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 97 158 IPR036638 GO:0046983
Pumo8g02076 208 Coils Coil 132 159 - -
Pumo8g02076 208 MobiDBLite consensus disorder prediction 1 16 - -
Pumo8g02076 208 Pfam Helix-loop-helix DNA-binding domain 98 143 IPR011598 GO:0046983
Pumo8g02076 208 Gene3D - 93 163 IPR036638 GO:0046983
Pumo8g02076 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 93 142 IPR011598 GO:0046983
Pumo8g02076 208 PANTHER BHLH TRANSCRIPTION FACTOR 25 184 - -
Pumo8g02076 208 SMART finulus 99 148 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02076 Pumo-Chr8 57670532 57672075 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02076 95 170 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 68.421 1.03e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo8g02076 HLH 3.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02076 - - gmx:100816024 229.95