Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02075 ATGATGGAAATTGCGTACAACAACTACTTGCCTGAACTTGGATTAATTGAGGATCCAACCTTGTTTGATCAATACCCGATGGATTCATTTGCATGTCCACTCGATGACTTTGACTTTGAGTCTTTCTCCGGGTCCCCAGAGAGCAATTCCTCTTATCAGCTCAACTCAGAAAGCACACCAAATTGTTTCCCAGCAGAAAGTCCTGATCAGTCTTTTACTCCTGCAAGACCAACCAAGAGGCTCAAGACATTCAATACCTTGAACACTTGTGCCGGTGACTTAATTTCCCACAAGGTTTCTGCTTCTCCTCCATCTTCCCAACTTATCTCTTTCGAGCACTTTAATGCCCCATCACATGCTTCCCGGCAATTTCACAACCTGGATGTGAAGCCTAAAATCGAGAAGGCGTGTAGTGAGAGCATGGATTTTGCAGCTTTTGTTTCTCAAGGTTCATATGAGGACAAAAGTTTCCTCAGTTCTGATAATAGAACGAACCAGGTTGGCATAACCACTAGGAACCCGATCCAAGCTCAAGAGCACGTATTAGCTGAAAGAAAACGAAGGGAAAAGCTCAGCCAGAGATTCATTGCACTTTCCGCCATCCTCCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGAGATGCTATCAAGTATGTGAAACAACTACAAGAGCGCGTGCAAAGTCTGGAGGAGCAAGCAGTGAAGAGAACAGTTGGATCTTCCGTTCTGGTGAAAAGATCTATTCTCTTCTCTGATGATGAAAATTCTGACAGCCATTCACTCCCCGAAATCGAAGTCAGAGTTTCTGGGAAAGATGTACTCATCAGAACTCAAAGCGACAAACACAGTGGACATGCTGCAATGATACTCGGCGAATTAGAAAAGCTTGATTTCACTGTCCAGAGTAGCAGCTTTTTGCCCTTCGGCAATAACTATATTGATGTAACTATTATTGCTCAGATGAACAAGGAAAAGAGCATGACAGCAAAAGATCTCCTAGGAAGGTTACGACAGGCTTTGAGGCAGTTGATTTGA 1041 0.44 MMEIAYNNYLPELGLIEDPTLFDQYPMDSFACPLDDFDFESFSGSPESNSSYQLNSESTPNCFPAESPDQSFTPARPTKRLKTFNTLNTCAGDLISHKVSASPPSSQLISFEHFNAPSHASRQFHNLDVKPKIEKACSESMDFAAFVSQGSYEDKSFLSSDNRTNQVGITTRNPIQAQEHVLAERKRREKLSQRFIALSAILPGLKKMDKASVLGDAIKYVKQLQERVQSLEEQAVKRTVGSSVLVKRSILFSDDENSDSHSLPEIEVRVSGKDVLIRTQSDKHSGHAAMILGELEKLDFTVQSSSFLPFGNNYIDVTIIAQMNKEKSMTAKDLLGRLRQALRQLI 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02075 346 CDD bHLH_AtNAI1_like 177 249 - -
Pumo8g02075 346 MobiDBLite consensus disorder prediction 43 75 - -
Pumo8g02075 346 Pfam Helix-loop-helix DNA-binding domain 178 225 IPR011598 GO:0046983
Pumo8g02075 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 235 IPR036638 GO:0046983
Pumo8g02075 346 Coils Coil 214 234 - -
Pumo8g02075 346 Gene3D - 176 243 IPR036638 GO:0046983
Pumo8g02075 346 SMART finulus 181 230 IPR011598 GO:0046983
Pumo8g02075 346 FunFam Basic helix-loop-helix family protein 172 241 - -
Pumo8g02075 346 PANTHER BHLH TRANSCRIPTION FACTOR 25 344 - -
Pumo8g02075 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02075 Pumo-Chr8 57653679 57656367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02075 105 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.314 6.67e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo8g02075 HLH 6.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02075 - - gmx:100791810 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02075 8 57653679 57656367 Pumo8g02075 8 57653679 57656367 ECH
Pumo8g02075 8 57653679 57656367 Pumo4g01812 4 24435586 24438703 PCT