Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02062 ATGGGTCTTGATCAGGATGCCAATAGCTCAGGCCTTCACCTCGTTCTAGGGCTATCTTTGACTGCTACCGCAAAGGAATTAACCACTCCCTCCACCAAACCTGATGATCCTCCTCATCTTTGCGTTATTAAGCCAACGCCAACGAAACCTTCTTATCCCTCGAATGAACCATCCTTAACGTTGGGTCTGTCCGGTGAGATCAGTTACCACGTGGCCAAGCAAGTCCCCAGAAATAACAAGGTTTATTGTGAGGACCCTCTTGACTTGTCTAGACAGACATCACCTCACAGCGTTGTTTCGTCTTTCTCAACTGGGAGGGTTGTGAAGAGGGAGAGGGATCTTAGCTGTGAAGACGTAGAGGCAGAAGAGAGGGTTTCTTCACGAGTGAGCGACGAAGACGAAGACGGCACCAATGCTAGAAAGAAGCTCAGGCTCACCAAAGAACAATCTGCACTGCTAGAGGAGAGCTTCAAACAACACAGCACTCTCAACCCCAAACAGAAGCAAGCTTTAGCCAGACAGTTAAATCTACGGCCTCGACAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCCAGAACAAAGCTGAAGCAAACGGAGGTGGACTGTGAGTTCTTAAAGAAATGCTGTGAAACATTGACGGACGAAAACAGGAGGTTAAAGAAGGAGCTGCAAGAGCTGAAGGCACTGAAACTAGCTCAACCCTTGTACATGCCTATGCCTGCGGCAACACTCACCATGTGCCCTTCTTGTGAGAGGCTCGGTGGCGTTACCGATAACGGTTCCAATAAAAGCCCCTTCTCCATGGCTGCCAAGCCTCACTTCTACAACCCCTTCGCCAATCCTTCTGCAGCATGTTGA 858 0.493 MGLDQDANSSGLHLVLGLSLTATAKELTTPSTKPDDPPHLCVIKPTPTKPSYPSNEPSLTLGLSGEISYHVAKQVPRNNKVYCEDPLDLSRQTSPHSVVSSFSTGRVVKRERDLSCEDVEAEERVSSRVSDEDEDGTNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGVTDNGSNKSPFSMAAKPHFYNPFANPSAAC 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02062 285 Coils Coil 202 232 - -
Pumo8g02062 285 MobiDBLite consensus disorder prediction 27 57 - -
Pumo8g02062 285 FunFam Homeobox-leucine zipper protein 18 124 201 - -
Pumo8g02062 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 16 269 - -
Pumo8g02062 285 SUPERFAMILY Homeodomain-like 132 197 IPR009057 -
Pumo8g02062 285 MobiDBLite consensus disorder prediction 119 143 - -
Pumo8g02062 285 Pfam Homeodomain 140 194 IPR001356 GO:0003677
Pumo8g02062 285 ProSiteProfiles 'Homeobox' domain profile. 136 196 IPR001356 GO:0003677
Pumo8g02062 285 Gene3D - 144 194 - -
Pumo8g02062 285 SMART HOX_1 138 200 IPR001356 GO:0003677
Pumo8g02062 285 SMART halz 196 239 IPR003106 GO:0006355|GO:0043565
Pumo8g02062 285 Pfam Homeobox associated leucine zipper 196 230 IPR003106 GO:0006355|GO:0043565
Pumo8g02062 285 CDD homeodomain 140 197 IPR001356 GO:0003677
Pumo8g02062 285 ProSitePatterns 'Homeobox' domain signature. 171 194 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02062 Pumo-Chr8 57530969 57532991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02062 1 285 Homeobox Transcription Factor Family AT4G37790 59.468 2.33e-99 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo8g02062 Homeodomain 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02062 K09338 - gmx:100784129 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02062 8 57530969 57532991 Pumo4g01823 4 24583705 24585050 PCT