Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02057 ATGAAGCCTATCGAAAATGGCAATACCGTTAACATCAACTATCAAAATAGCTGGTTAGGCTTCTCCCTCTCCCCACAAATGAATATAGGTGTTCCTTCACACCCTTATCAGACACAGCCTTCATCCGCAGCTGTTGAAACAGTTCCACAAAGCCTTTACCATCATACACCTTTCCAAAACTATGGGCTTTACTATGGACTTGAAGGTGAACACGTTGGAATGAGTTCATCCTTGCCTATCATGCCCCATAAATCCAATGCCTCTCTCTCTGGAATAGAAGCTCTGAGTAGATCACAAGCACAAGCAACGACAACTACTTCAGCAATGCATCCAAGCTTAAATAGTATGCTTTACAACCAACTCTTATGCCATGGACTAAACAATCCAAACAACTTAAATCTCGTTCAAGAGAATATCAGCCAGCAACAATTCTTGTATTACTCTACCTTAAGAAACCATGATGTGATTTTAGAAGGGTCCAAGTACCAGCTCCCATGTATAGCTGAGGATGAAATTCCTGGTCTGAAGAGTTGGTTCTCAAGGGACTTTCCTGCTAGCCATGCACAGGAGTCAAGGATGACAATTCCTTTGGAGGATAATGGAGGCGAATCTGGATCCATTGGATCAATAACATATGGGGATTTACATTCATTGAATTTGTCTGCGAGTCCTACCTCACGATCAAGTTGTGTTACAAGTTCACCTGCTCTCACTGATACTGTTGTCACTGTTACCAAGAAAAGGGAACTTGAAATGGTGGACCAGAATCAGAAGCAAATAGTTCATAGGAAATCCATAGATACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGCCAAGGAAGAAAAGGAAGGCAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATATGGCCGCACTCAAGTATTGGGGACCCTCCTCTCATATAAATTTCCCATTGGAAAATTATCAAAACGAACTTGAGGAAATGAAGAACATGACCAGACAAGAATATGTTGCTCATTTAAGAAGGAAAAGCAGCGGATTCTCAAGAGGGGCCTCCATGTACAGAGGAGTAACAAGCAGGCACCACCAACATGGAAGGTGGCAAGCTCGAATTGGGAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGTACCCAAGAAGAAGCAGCTGAAGCCTATGACATTGCTGCTATTAAATTCAGAGGAGTTAATGCTGTTACTAACTTTGATATAACAAGATATGACGTGGAAAAAATTATGGAGAGCAATAACCTTCTTAGCAGTGAACAAGCTAAGCGGAAAAGAGAGATGGATGGTGGAACTATAAAGGAGGCTATTGTTAACCAAAAACCTTCTACATATGACCACAATCAAGAAACCGTTCCAATGCAGAAAAGCTGCAAAAGCCAATCAGAATGGAAGATGGTTCTCTATCCATCCTCCCAACAGCTTGATCAGAATCCACAAAGAACTGAGAGTTGTAGAACTCAGCCCTTCTCAACGGCTTTAGATAACATGTTTCATCACGAAGTTGAGGAATCGAGTAACATGGGAACACACTTGTCAAATCCTTCTTCTCTGGTGACAAGTTTGAGTAGCTCAAGAGAAGACAGCCCAGATAAGACAAGCTTGCCAATGCTTTTTGGAATGCCTTCAACAGTGTCCAAATTATTGGCTAACATTCCAACTAGTAACGTGGATTCTTGGGATCTATCTTCCAATCTCAGGCCCGCGCTTTCTTTGCCTCAGATGCCAATTTTTGCTGCTTGGACTGATGCATAA 1860 0.4199 MKPIENGNTVNINYQNSWLGFSLSPQMNIGVPSHPYQTQPSSAAVETVPQSLYHHTPFQNYGLYYGLEGEHVGMSSSLPIMPHKSNASLSGIEALSRSQAQATTTTSAMHPSLNSMLYNQLLCHGLNNPNNLNLVQENISQQQFLYYSTLRNHDVILEGSKYQLPCIAEDEIPGLKSWFSRDFPASHAQESRMTIPLEDNGGESGSIGSITYGDLHSLNLSASPTSRSSCVTSSPALTDTVVTVTKKRELEMVDQNQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQGRKGRQVYLGGYDMEEKAARAYDMAALKYWGPSSHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMESNNLLSSEQAKRKREMDGGTIKEAIVNQKPSTYDHNQETVPMQKSCKSQSEWKMVLYPSSQQLDQNPQRTESCRTQPFSTALDNMFHHEVEESSNMGTHLSNPSSLVTSLSSSREDSPDKTSLPMLFGMPSTVSKLLANIPTSNVDSWDLSSNLRPALSLPQMPIFAAWTDA 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02057 619 CDD AP2 274 341 IPR001471 GO:0003700|GO:0006355
Pumo8g02057 619 SMART rav1_2 275 347 IPR001471 GO:0003700|GO:0006355
Pumo8g02057 619 SMART rav1_2 377 442 IPR001471 GO:0003700|GO:0006355
Pumo8g02057 619 ProSiteProfiles AP2/ERF domain profile. 275 341 IPR001471 GO:0003700|GO:0006355
Pumo8g02057 619 PRINTS Ethylene responsive element binding protein signature 276 287 IPR001471 GO:0003700|GO:0006355
Pumo8g02057 619 PRINTS Ethylene responsive element binding protein signature 418 438 IPR001471 GO:0003700|GO:0006355
Pumo8g02057 619 Coils Coil 342 362 - -
Pumo8g02057 619 SUPERFAMILY DNA-binding domain 274 343 IPR016177 GO:0003677
Pumo8g02057 619 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 233 517 - -
Pumo8g02057 619 Pfam AP2 domain 378 428 IPR001471 GO:0003700|GO:0006355
Pumo8g02057 619 Pfam AP2 domain 275 333 IPR001471 GO:0003700|GO:0006355
Pumo8g02057 619 FunFam AP2-like ethylene-responsive transcription factor 376 438 - -
Pumo8g02057 619 Gene3D AP2/ERF domain 377 438 IPR036955 GO:0003700|GO:0006355
Pumo8g02057 619 Gene3D AP2/ERF domain 274 343 IPR036955 GO:0003700|GO:0006355
Pumo8g02057 619 SUPERFAMILY DNA-binding domain 376 437 IPR016177 GO:0003677
Pumo8g02057 619 ProSiteProfiles AP2/ERF domain profile. 377 436 IPR001471 GO:0003700|GO:0006355
Pumo8g02057 619 MobiDBLite consensus disorder prediction 539 569 - -
Pumo8g02057 619 MobiDBLite consensus disorder prediction 542 566 - -
Pumo8g02057 619 FunFam AP2-like ethylene-responsive transcription factor ANT 274 343 - -
Pumo8g02057 619 CDD AP2 376 438 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02057 Pumo-Chr8 57433347 57436978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02057 358 619 AP2-EREBP Transcription Factor Family AT4G37750 25.763 6.06e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pumo8g02057 AP2 5.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02057 K09285 - gmx:100812275 1058.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02057 8 57433347 57436978 Pumo4g01832 4 24863960 24868210 PCT