Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02056 ATGCTTTCTGCTCTTCCTTTTCAGGGAAGCGCATTCCCGGCGTTGGACTACGGTTTAACGCCGTGGGATGGGCCTGACTCTTTGGGCTTCCAGCCCACCAGCCCAAACCCCGTCACTTCAAGTTCTGGTTCGGACGACCCAAACCGAACCCATGCAGAAGAAAAACCGGTCTTGGACGAGTCGAACCGCGTTGCGTCCGTCACGGAGGCGCGAAAACGCAAGCGAATGATATCGAACCGGGAATCTGCCCGAAGGTCACGCATGCGTAAACAGAGACACCTAGAGAACTTATGGAACCAGGTGAACATGTTTAGGATTGAAAACCGGGAACTGAACAACGGGTTGCAGTTCCTCCTTCACCACTGTACCCGCCTACGAACCGAAAACGAGTGGCTCCGGTCCGAACGTACCCTTCTCCGCCAAAAACTGGCCAACATAAACCAAATATTGGTTTTCCAACAATTGCAACAACCCTTTTCCTTTGCATGGCCATGCAATATTGTCTTCACGGAATAA 516 0.5194 MLSALPFQGSAFPALDYGLTPWDGPDSLGFQPTSPNPVTSSSGSDDPNRTHAEEKPVLDESNRVASVTEARKRKRMISNRESARRSRMRKQRHLENLWNQVNMFRIENRELNNGLQFLLHHCTRLRTENEWLRSERTLLRQKLANINQILVFQQLQQPFSFAWPCNIVFTE 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02056 171 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 74 89 IPR004827 GO:0003700|GO:0006355
Pumo8g02056 171 Pfam bZIP transcription factor 69 130 IPR004827 GO:0003700|GO:0006355
Pumo8g02056 171 CDD bZIP_plant_GBF1 72 122 IPR045314 GO:0003700|GO:0006355
Pumo8g02056 171 MobiDBLite consensus disorder prediction 47 84 - -
Pumo8g02056 171 MobiDBLite consensus disorder prediction 27 46 - -
Pumo8g02056 171 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 69 132 IPR004827 GO:0003700|GO:0006355
Pumo8g02056 171 FunFam BZIP transcription factor 69 120 - -
Pumo8g02056 171 Gene3D - 70 123 - -
Pumo8g02056 171 SMART brlzneu 67 131 IPR004827 GO:0003700|GO:0006355
Pumo8g02056 171 SUPERFAMILY Leucine zipper domain 71 124 IPR046347 GO:0003700|GO:0006355
Pumo8g02056 171 PANTHER BZIP TRANSCRIPTION FACTOR 44 33 153 - -
Pumo8g02056 171 MobiDBLite consensus disorder prediction 23 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02056 Pumo-Chr8 57412208 57413048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02056 29 156 bZIP Transcription Factor Family AT2G22850 42.568 6.17e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo8g02056 bZIP_1 8.6e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02056 - - gmx:102661188 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02056 8 57412208 57413048 Pumo4g01837 4 24921722 24922617 PCT