Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02050 ATGCCGATGTTTCAGCCTTGTCGGAAGGACATGGTTGCCGGGTACGAGGGTGGTGGCGACGGCCAGATTCTAGATCTGGACACCGCCGTGAAGGACGGCGTTTTGGGCGGCGTGGAGGGTGGGGTTGTGGGAGGTGGGGTTGGTGAGAAGGTGGATCTGGGGAAGATGATTGAGGAGCTCGAGTTATGTGAAGTGCCCAGTGTGTTCATTTGCCCAATCTCTTTGGAACCAATGCAAGACCCTGTGACCCTCTGCACAGGCCAAACATACGAGAGGTCCAACATTCTTAAATGGTTCAACTTGGGGCACTTCACCTGCCCCACAACGATGCAAGAGCTCTGGGACGATTCCGTCACTCCAAACACCACCCTTTACAGGCTCATACACACGTGGTTCTCGCAGAAGTACTTGCTGATGAAGAAGAGGTCAGAGGATGTTCAGGGAAGGGCCTCTGAACTTCTCGAGACACTGAAGAAGGTGAAGGGTCAGGCTCGGGTTCAGGCCCTCAAGGAGCTTCACCAATTAGTGGCTTCTCATGCCACTGCACGCAAGACTGTGATTGATGAAGGTGGAGTGTCTGTTGTGTCTTCTCTGCTTGGTCCTTTTACTTCCCATGCTGTTGGCTCTGAGGTTATTGGTATTCTTGTGAGTTTGACCCTTGATTCCGAATCTAGGAAGAATCTCTTGCAGCCTGCTAAGGTTTCCTTGATGGTGGACATCTTGAATGAGGGTTCCATTGAGACCAAGATCAATTGCACAAGGCTGATTGAATCATTGATTGAGGAGAAGGATTTTCGGTCGGAGGTTATATCGAGTCATAGCCTCTTGGTTGGGTTGATGAGGCTTGTTAAGGATAAGCGGCACAGCAATGGAGTGTGTCCTGGGCTGAGTCTTCTCAGAACAATTTGTTTGCATAAAGAAGTTAGGAATTTGCTAGTCAGCATTGGGGCTGTTTCTCAGTTAGTTGAATTGTTGTCTGGCATGGAGCCTGATTGTTTGGAATTGGCCCTGTGTGTTCTAGATGCACTGGCGTCTGTACCCGAAGGCAGAGTGGCTTTGAAGGATTGTTCTAACACCATACCGATCATGGTGAAACTGTTGATGAGGATCTCAGAAAACTGTACCCAGTATGCTTTGTCAATTCTATGGTCTGTGTGCAAGCTTGCACCGGAGGAGTGCTCGTCGATTGCGGTTGATGCAGGGCTTGCTGCTAAACTCCTTCTTGTGATTCAAAGTGGTTGCAATCCTATATTGAAACAGCAGTCTGCCGAGCTTTTGAAGCTGTGTAGTTTAAATTATTCAGATACCATCTTCATTTCCAAGTGCAAGCTTACCAGAACCATCCAATGA 1350 0.4874 MPMFQPCRKDMVAGYEGGGDGQILDLDTAVKDGVLGGVEGGVVGGGVGEKVDLGKMIEELELCEVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNLGHFTCPTTMQELWDDSVTPNTTLYRLIHTWFSQKYLLMKKRSEDVQGRASELLETLKKVKGQARVQALKELHQLVASHATARKTVIDEGGVSVVSSLLGPFTSHAVGSEVIGILVSLTLDSESRKNLLQPAKVSLMVDILNEGSIETKINCTRLIESLIEEKDFRSEVISSHSLLVGLMRLVKDKRHSNGVCPGLSLLRTICLHKEVRNLLVSIGAVSQLVELLSGMEPDCLELALCVLDALASVPEGRVALKDCSNTIPIMVKLLMRISENCTQYALSILWSVCKLAPEECSSIAVDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02050 449 CDD RING-Ubox_PUB 66 118 IPR045210 -
Pumo8g02050 449 Pfam U-box domain 65 135 IPR003613 GO:0004842|GO:0016567
Pumo8g02050 449 PANTHER WDSAM1 PROTEIN 58 435 IPR045185 GO:0061630
Pumo8g02050 449 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842|GO:0016567
Pumo8g02050 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 137 IPR013083 -
Pumo8g02050 449 SUPERFAMILY RING/U-box 59 135 - -
Pumo8g02050 449 SUPERFAMILY ARM repeat 148 433 IPR016024 -
Pumo8g02050 449 SMART Ubox_2 68 131 IPR003613 GO:0004842|GO:0016567
Pumo8g02050 449 Gene3D - 138 444 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02050 Pumo-Chr8 57364635 57367247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02050 1 449 U-box Gene Family AT3G49810 76.169 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02050 - - gmx:100816457 843.573