Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02028 ATGGCTATCATGAACGACAATTGTTCCAAGTCTCTCCAAAATACTAAGAACTTAACTCCGTTACCGCCTCCTATGCCCCGTTCATCACCAACCAGTTGTCCTTGTAAGTGTTTGGCGTCGAATAATTCAACACAAAGAGGGCACAACAACAACAACAACAACGTCTATTCAGCAAAAAGAGATTTGTGGGAGAGTCTTTTTTATCAAGGCTATAAAGCAGATGTCTACATTAATACTGATAACGGTGGCGTTATTTATGCTCATTCTAACATTCTTGGCATGGCTTCTCCCGTATTCAGGGGCATGTTGAAGCAAGCAAATCGTCGTGGTCGATGGCGAACAATCTCAATCATTGGGATTCCACATGATGCAGTTCAAGTTTTTATTCGATTCTTATACACTTCTAGTTATGAGAAAGAAGAAATGGATGAATTTGTCCTACATTTGTTGGTGTTGTCACATGTATATGCGGTCCCTCACTTGAAGCGTGAATGTGAACAAAAGCTAGAACTGGGTTTACTCACCATAGATAATGTGGTTGATGTATTTCAACTCGCCTTACTATGTGATGCTCCGAGGCTCAGCCTTATTTGTCACCGCAAGGTGCTAAAAAACTTCAAAGTTGTTTCAGAGACAGAAGGATGGAAAGCAATGAAGATGAGCCATCCAGTTCTAGAAAAGGAAATTTTGGAGTCAATGATTGATGAAGATAACATTAAGAAGGAAAGGATCCGAAAAATGAAGGAAAGAAAGATATATCTGCAATTATACGAGGCCATGGAAGCTCTTGTTCACATATGTAGAGATGGTTGTCGAACTATTGGTCCTCACGACAAAGATTTCAAAGCAAACCAACCGTGTAAGTATGCAGCATGCAATGGGTTAGAATTGCTTGTTCGTCATTTTGCTGGATGTAAGTTAAGAGTCCCTGGAGGTTGTGTTCATTGCAAGAGGATGTGGCAATTATTGGAGTTACACTCTCGATTATGTGCTGATCCAGATTACTGTAGAGTTCCTTTGTGCAGGAACTTTAAGCAGCGAATATCAAAGCAAAGCAAGAAAGACGAAATTAGGTGGAAAATATTGGTTGAAAAGATCTTGAGAACAAGAGGAATTGGGATAGCATCGTGCTTTCTGCCGCAATAA 1146 0.4014 MAIMNDNCSKSLQNTKNLTPLPPPMPRSSPTSCPCKCLASNNSTQRGHNNNNNNVYSAKRDLWESLFYQGYKADVYINTDNGGVIYAHSNILGMASPVFRGMLKQANRRGRWRTISIIGIPHDAVQVFIRFLYTSSYEKEEMDEFVLHLLVLSHVYAVPHLKRECEQKLELGLLTIDNVVDVFQLALLCDAPRLSLICHRKVLKNFKVVSETEGWKAMKMSHPVLEKEILESMIDEDNIKKERIRKMKERKIYLQLYEAMEALVHICRDGCRTIGPHDKDFKANQPCKYAACNGLELLVRHFAGCKLRVPGGCVHCKRMWQLLELHSRLCADPDYCRVPLCRNFKQRISKQSKKDEIRWKILVEKILRTRGIGIASCFLPQ 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02028 381 Gene3D Potassium Channel Kv1.1; Chain A 40 173 IPR011333 -
Pumo8g02028 381 ProSiteProfiles BTB domain profile. 73 141 IPR000210 GO:0005515
Pumo8g02028 381 Pfam BTB/POZ domain 66 169 IPR000210 GO:0005515
Pumo8g02028 381 MobiDBLite consensus disorder prediction 1 27 - -
Pumo8g02028 381 FunFam BTB/POZ and TAZ domain-containing protein 2 175 245 - -
Pumo8g02028 381 SUPERFAMILY POZ domain 53 169 IPR011333 -
Pumo8g02028 381 SUPERFAMILY TAZ domain 250 350 IPR035898 -
Pumo8g02028 381 CDD BACK 175 232 - -
Pumo8g02028 381 Pfam TAZ zinc finger 257 341 IPR000197 -
Pumo8g02028 381 SMART BTB_4 73 173 IPR000210 GO:0005515
Pumo8g02028 381 Gene3D - 174 248 - -
Pumo8g02028 381 Gene3D TAZ domain 249 369 IPR035898 -
Pumo8g02028 381 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 44 374 IPR044513 -
Pumo8g02028 381 MobiDBLite consensus disorder prediction 1 18 - -
Pumo8g02028 381 FunFam BTB/POZ and TAZ domain-containing protein 2 247 371 - -
Pumo8g02028 381 SMART TAZ_2 250 342 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02028 Pumo-Chr8 57170389 57172488 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Pumo8g02028 BTB 8.4e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02028 - - gmx:100807461 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02028 8 57170389 57172488 Pumo8g02028 8 57170389 57172488 ECH