Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02016 ATGTCGAAGGCGCGTGTCTACACCGATGTCAATGTTCTTCGCCCCAAGGAGTATTGGGATTACGAGTCTCTCACCCTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGCAGGGGGAAATATAGTGAAGTTTTTGAAGGCATAAATGTTAATAGCAATGAGCGCTGTATAATCAAGATTCTGAAACCTGTGAAGAAAAAAAAGATTAAAAGAGAGATAAAAATACTTCAGAATATTTGTGGAGGCCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAACATTCGAAAACTCCCAGTTTGATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGGCCTTGGATTACTGCCATTCTCAAGGCATTATGCATAGGGATGTCAAGCCTCACAATGTTATGATAGATCATGAGTTACGAAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATATAATGTTCGTGTGGCTTCAAGATACTTCAAGGGGCCTGAACTTCTAGTTGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAAGAACCTTTCTTTTATGGTCATGACAACCATGATCAGCTTGTCAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCATATCTTAATAAGTATCATCTGGAGCTTGATCCTCAACTTGATGCACTTGTTGGAAGACACAGTCGAAAGCCCTGGTCTAAATTTATTAATGCAGATAATCAGCATCTTGTGTCTACTGAGGCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTAACAGCTAGAGAAGCAATGGTAATGATAAAGAGCTCATTAGTTTGTAGTTTTTTCAATTTGCAGTGGTTCTTTTGTTACATAAACTTTAAAATGTTTTGGTTTAACAAATATTTATATTTTGTCAAAATTATAATTTTTGTCTTCTAA 1071 0.3716 MSKARVYTDVNVLRPKEYWDYESLTLQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNICGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSTEAIDFLDKLLRYDHQDRLTAREAMVMIKSSLVCSFFNLQWFFCYINFKMFWFNKYLYFVKIIIFVF 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02016 356 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 315 IPR045216 GO:0004674|GO:0006468
Pumo8g02016 356 ProSiteProfiles Protein kinase domain profile. 34 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g02016 356 CDD STKc_CK2_alpha 15 314 IPR045216 GO:0004674|GO:0006468
Pumo8g02016 356 SUPERFAMILY Protein kinase-like (PK-like) 9 314 IPR011009 -
Pumo8g02016 356 FunFam Casein kinase II subunit alpha 20 110 - -
Pumo8g02016 356 Gene3D Phosphorylase Kinase; domain 1 34 110 - -
Pumo8g02016 356 FunFam Casein kinase II subunit alpha 111 318 - -
Pumo8g02016 356 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Pumo8g02016 356 SMART serkin_6 34 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g02016 356 Gene3D Transferase(Phosphotransferase) domain 1 111 314 - -
Pumo8g02016 356 Pfam Protein kinase domain 34 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g02016 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02016 Pumo-Chr8 56951076 56956234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02016 32 314 Core Cell Cycle Gene Families AT1G76540 28.289 6.77e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Pumo8g02016 Pkinase 1.9e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02016 K03097 - gmx:100810748 627.476