Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02003 ATGTTGCAGCTGTGCCGCAGGCCACTGGAGATGTGCTTCGGTGGTGGAGGCAACGACGATGGCCTCCTCTGGCACACGGACCTTAAGCCCCACGCTTCAGGGAACTACTCAATTGCAGTGGTACAAGCTAATTCATCCTTGGAAGACCAAGCACAAGTGTTTACCTCTCCCTCCGCAACCTTTGTTGGGGTATACGACGGTCACGGTGGACCTGAAGCTTCCCGTTTCATCACCAACCATCTCTTCTCCTTCCTTCGCAAGTTCGCTACAGAGGAAGGTGGTTTGTCGGAGGAGGTGATAAAGAAGGCGTTCGAGGCAACCGAGGAGGAGTTTTTGCGTTTAGTGAGGCAATCATGGATTGCGCGGCCACAGATAGCTTCAGTGGGTTCGTGTTGTCTTCTGGGAGCGATTTCAAAAGACGTTCTTTATGTTGCTAATCTCGGGGATTCGAGAGCAGTTTTGGGTCGGAAAGCGTTGGAAGGAGAGATGAATTGTGGTGCTGTGGTGGCAGAGCGTTTGTCCACTGATCATAATGTTGGAGTGGAGGAGGTCAGAAAGGAGGTTGAAGCTCTTCACCCTGATGATGCACACATTGTGGTTTGCACTCGGGGAGTTTGGCGAATCAAGGGCATTATTCAGGTCTCAAGATCAATTGGAGATGTTTACCTAAAGAAACCAGAATTTGACACTAATCCTCTGTTCCAACAATTTGTATGTCCACTATACTTGAAGAGACCTGTAATGACAGCTGAACCATCGATATTGAAGCGGAAGTTGAAGGCAGATGATCTGTTTCTGATCTTTGCATCAGACGGACTTTGGGAGCATTTAACTGATGAAGCGGCTGTTGAAATCATCTTCAGAAGTCCCAGAATAGGAATAGCAAAACGATTGGTGAGAGCTGCACTAGAAGAGGTTGCAAAGAAAAGAGAAATGAGGTATGAGGATCTAAGGAAAATTGATAAAGGTCTAAGGCGCCATTTTCATGATGATATTACAGTGATCGTTCTATATCTCGATCATTCAAAAGAATCTCTAAATGGTAGATCAAGACATAAAGGAGTTTATGATTGCATCAATACTCCTATTGATATCTTCTCTCTGAGCGCAAATGAGGCTGATCTTTAA 1128 0.4583 MLQLCRRPLEMCFGGGGNDDGLLWHTDLKPHASGNYSIAVVQANSSLEDQAQVFTSPSATFVGVYDGHGGPEASRFITNHLFSFLRKFATEEGGLSEEVIKKAFEATEEEFLRLVRQSWIARPQIASVGSCCLLGAISKDVLYVANLGDSRAVLGRKALEGEMNCGAVVAERLSTDHNVGVEEVRKEVEALHPDDAHIVVCTRGVWRIKGIIQVSRSIGDVYLKKPEFDTNPLFQQFVCPLYLKRPVMTAEPSILKRKLKADDLFLIFASDGLWEHLTDEAAVEIIFRSPRIGIAKRLVRAALEEVAKKREMRYEDLRKIDKGLRRHFHDDITVIVLYLDHSKESLNGRSRHKGVYDCINTPIDIFSLSANEADL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02003 375 Pfam Protein phosphatase 2C 57 303 IPR001932 -
Pumo8g02003 375 CDD PP2Cc 42 339 IPR001932 -
Pumo8g02003 375 PANTHER PROTEIN PHOSPHATASE 36 337 IPR015655 GO:0004722|GO:0006470
Pumo8g02003 375 SUPERFAMILY PP2C-like 40 341 IPR036457 -
Pumo8g02003 375 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169
Pumo8g02003 375 ProSiteProfiles PPM-type phosphatase domain profile. 35 339 IPR001932 -
Pumo8g02003 375 FunFam Probable protein phosphatase 2C 42 26 347 - -
Pumo8g02003 375 SMART PP2C_4 28 337 IPR001932 -
Pumo8g02003 375 Gene3D - 25 347 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02003 Pumo-Chr8 56822379 56826554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02003 17 345 PP2C-type Phosphatase Gene Family AT3G51370 54.896 1.02e-138 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02003 - K01102 gmx:100802394 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02003 8 56822379 56826554 Pumo8g02003 8 56822379 56826554 ECH
Pumo8g02003 8 56822379 56826554 Pumo3g00659 3 9882150 9885492 PCT