Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01979 ATGGGTATGGCCGTGGAGCTGATGATGGGGTATAGGGACGACAATTTTGCGGAAGAGAATGCGGTTCGTGAAGCTGCGTCGGGGCTAGAGAGCGTAGAGAAACTCATCAAGTTGTTGTCACAGACTCAACAACAATACCACACACCCAATTCAACTTCAAAGTCTTCCATGGAAAAAATTGAAACCGACTACAGAGCTGTAGCTGACGTGGCCGTTTCTAAGTTCAACAAGGTGATTTCGCTTCTGGGCCGCACCAGAACCGGTCACGCGCGTTTTAGAAGAGCCCCTGTGCCTCCCCCACCTCCACCTTCGGAACCCAGAGTCTACCGTGCTACGCCGCTGCAGCAGATCCCGCCACCCACCCTTCACACTGTCATTGACCACTCTTTGATCCCCAAAAATGGTCCCGGGGTCATTGAGAGAAAGGACTCTTCCAAGACCATTAATTTCTCGTATTCCTCTGCTGCAAATTCCTTCGTCTCTTCCCTCACCGGCGACACCGACACTAAACAGCCGTGCTCCTCGTCGCCGTCGCCGTCGCCGGCCACGCCTTTTCAGATCACCAATCTCTCTCAGGTCTCTTCCGCCGGAAAGCCTCCTCTTTCTTCCTCTTCGTTGAAGAGGAAGTGTAGCTCTGACAACTTGGGTTCTGCCAAGTGTGGCAGTTCCTCTAGCCGATGCCATTGTTCAAAGAAGAGCAGAAAAATGAGGTTGAAGAGAGTGGTGAGGGTACCAGCAATAAGCTTGAAGATGGCTGATATTCCACCCGATGATTATTCTTGGAGGAAATATGGACAGAAACCCATTAAAGGATCTCCTTATCCAAGAGGTTACTACAAGTGCAGCAGTGTTAGAGGGTGTCCAGCGCGCAAGCACGTAGAGAGGGCTCTGGATGACCCATCTATGTTGGTAGTCACCTATGAAGGAGAACACAACCACACTCTCTCTGCAGCTGAAGCTTCTAATCTCATCCTAGAATCCTCTTAA 987 0.5076 MGMAVELMMGYRDDNFAEENAVREAASGLESVEKLIKLLSQTQQQYHTPNSTSKSSMEKIETDYRAVADVAVSKFNKVISLLGRTRTGHARFRRAPVPPPPPPSEPRVYRATPLQQIPPPTLHTVIDHSLIPKNGPGVIERKDSSKTINFSYSSAANSFVSSLTGDTDTKQPCSSSPSPSPATPFQITNLSQVSSAGKPPLSSSSLKRKCSSDNLGSAKCGSSSSRCHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHTLSAAEASNLILESS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01979 328 MobiDBLite consensus disorder prediction 163 228 - -
Pumo8g01979 328 SUPERFAMILY WRKY DNA-binding domain 252 315 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo8g01979 328 Pfam WRKY DNA -binding domain 257 313 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo8g01979 328 SMART WRKY_cls 255 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo8g01979 328 Pfam Plant zinc cluster domain 207 253 IPR018872 -
Pumo8g01979 328 ProSiteProfiles WRKY domain profile. 250 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo8g01979 328 Gene3D WRKY domain 241 316 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo8g01979 328 FunFam WRKY transcription factor 65 239 316 - -
Pumo8g01979 328 MobiDBLite consensus disorder prediction 163 227 - -
Pumo8g01979 328 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 22 320 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01979 Pumo-Chr8 56409750 56411860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01979 3 319 WRKY Transcription Factor Family AT2G24570 42.733 2.99e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo8g01979 WRKY 3.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01979 - - gmx:100804089 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01979 8 56409750 56411860 Pumo8g01979 8 56409750 56411860 ECH
Pumo8g01979 8 56409750 56411860 Pumo4g00725 4 9382803 9384558 PCT