Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01973 ATGGAGGGTGAAGGAGAAGAGAGAGCAACAACGAGGAAGAGAAGCAGCGTGGTGGTGGAAGGTGCTGAGAGAAGATACAAAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAAATTAGAGAGCCCAATAAGCGTTCAAGGATTTGGCTCGGTTCCTATTCTACCCCTGTCGCCGCCGCACGTGCCTACGACACCGCCGTCTTTTACCTCCGGGGACCCTCCGCGCGCCTCAACTTCCCGGACCTTCTCGTCGGAGAAGGCGCCGCCCTCGTCGCCGGTTGCGACATGTCAGCGGCTTCGATCAGGAAGAAGGCCACCGAGGTCGGTGCTAGAGTCGATGCTCTTCAGGCAACCCTTCACCACCACCACCACCACCACGTGGCGCCGCCGCCGGAGCTTCTCTCCGTCGGCGGAGGTGGGTCCGGGGATTTCGCGGAGCGGGTTGTTGACCTGAACAAGATGCCCGAACCCGAGAGTTCGGACTGTGAGTGGGACGTCAATTGA 510 0.6 MEGEGEERATTRKRSSVVVEGAERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLVGEGAALVAGCDMSAASIRKKATEVGARVDALQATLHHHHHHHVAPPPELLSVGGGGSGDFAERVVDLNKMPEPESSDCEWDVN 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01973 169 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Pumo8g01973 169 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Pumo8g01973 169 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Pumo8g01973 169 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Pumo8g01973 169 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Pumo8g01973 169 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Pumo8g01973 169 PRINTS Ethylene responsive element binding protein signature 64 84 IPR001471 GO:0003700|GO:0006355
Pumo8g01973 169 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Pumo8g01973 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 163 - -
Pumo8g01973 169 CDD AP2 25 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01973 Pumo-Chr8 56373080 56374337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01973 15 167 AP2-EREBP Transcription Factor Family AT5G67190 55.307 9.97e-55 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo8g01973 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01973 K09286 - gmx:100527066 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01973 8 56373080 56374337 Pumo8g01973 8 56373080 56374337 ECH
Pumo8g01973 8 56373080 56374337 Pumo4g01939 4 26282956 26283940 PCT