Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01971 ATGATGACAAAGGCAAGAGAGTGGGATCTGTTTCCAATTCAAGCTCCTCTGCCGGTGCTAGTGGAAGATGGATCGGAAGAAGAAGACAGTGAAAGGGGTGGAAGCAGAACATTGGAGAGAAAAAGCAGCAAAATATTCGGCTTCTCGGTGACCCATGATGACAGTGACCACCCACCCGTGACTCATCAGTTTTTTCCGGTGGAGGACTCCGAGCTACCCGTCTCTGCCGCCGCCGCCGCCGTCGGAAGCTCCTTCCCACGTGCTCACTGGGTTGGTGTCAAATTTTGTCAGTCGGAAACACTCGGCGCCGGAAAAGCAGTGAAAGTGTCGGAGCCGATGAAGAAGAGTCGACGAGGACCACGCTCGCGTAGCTCACAGTATCGAGGAGTTACGTTCTACAGAAGAACCGGTAGATGGGAATCTCATATATGGGATTGTGGAAAGCAAGTATATTTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCGTATGATAGAGCTGCCATTAAGTTCCGGGGAGTGGAGGCAGACATCAATTTCAACATCGAAGACTATGAGGAAGACTTGAAGCAGATGAGCAATTTAACCAAGGAAGAGTTTGTGCACGTACTTCGTCGACAAAGCACTGGATTTCCGAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCATAAGTGTGGAAGATGGGAAGCTCGAATGGGCCAATTTTTGGGCAAAAAGTATGTTTATCTGGGTCTGTTTGACACCGAGATTGAAGCTGCAAGGGCATATGACAAAGCAGCAATAAAATGCAACGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATCTATGATAATGAACTTAATTCTGAATCCTCAGGTGTAGCTGCAGATCACAATCTGGATTTGAGTTTGGGCAATTCGAGCTCTAAACATAGCAATAGTCAAACATCAGGGAATCACTTCACAAATTCTGCAACCGATCAGCATATGCCAACTGAATCTAATTGGCAGAATGGGGGAAGCAAGCCTAAGGTTCATCTGGTAAATATACTACCAAAACCATGTGGTAGAAGCAACATGGAGCCCTATGTAAGAGATGGTCATGGGGAGAGTGAAACCTTGAGGCTGCTAAGCCAAACTCACCTTCAATCCCCAACCACTAAAGAAATGCACAGATATGGTCCGTATAGGTCGCCTGCAGAGCCTCAAATGCCTCACAATTTTGCACATCAACTTCACCAACCAAATTTTCATGTTCCTAGCAGCAGCAACGGAGGCCGTATTGGAAGTGATCTTTCGTTATCAATGTCCGATCAACAACAATGGCAAGCCGGGCCTCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCGCAGATTAGACCCTCCCAAGGTTGGCTGCAGAAAAATGGGTTCCACTCTCTCATGAGACCCTCTTGA 1437 0.4753 MMTKAREWDLFPIQAPLPVLVEDGSEEEDSERGGSRTLERKSSKIFGFSVTHDDSDHPPVTHQFFPVEDSELPVSAAAAAVGSSFPRAHWVGVKFCQSETLGAGKAVKVSEPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSESSGVAADHNLDLSLGNSSSKHSNSQTSGNHFTNSATDQHMPTESNWQNGGSKPKVHLVNILPKPCGRSNMEPYVRDGHGESETLRLLSQTHLQSPTTKEMHRYGPYRSPAEPQMPHNFAHQLHQPNFHVPSSSNGGRIGSDLSLSMSDQQQWQAGPPHLLATAAASSGFPPQIRPSQGWLQKNGFHSLMRPS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01971 478 ProSiteProfiles AP2/ERF domain profile. 126 182 IPR001471 GO:0003700|GO:0006355
Pumo8g01971 478 FunFam AP2-like ethylene-responsive transcription factor 217 277 - -
Pumo8g01971 478 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 55 379 - -
Pumo8g01971 478 FunFam AP2-like ethylene-responsive transcription factor 125 184 - -
Pumo8g01971 478 MobiDBLite consensus disorder prediction 295 337 - -
Pumo8g01971 478 SUPERFAMILY DNA-binding domain 217 277 IPR016177 GO:0003677
Pumo8g01971 478 MobiDBLite consensus disorder prediction 414 439 - -
Pumo8g01971 478 Gene3D AP2/ERF domain 217 276 IPR036955 GO:0003700|GO:0006355
Pumo8g01971 478 Gene3D AP2/ERF domain 125 184 IPR036955 GO:0003700|GO:0006355
Pumo8g01971 478 Pfam AP2 domain 126 174 IPR001471 GO:0003700|GO:0006355
Pumo8g01971 478 Pfam AP2 domain 217 266 IPR001471 GO:0003700|GO:0006355
Pumo8g01971 478 ProSiteProfiles AP2/ERF domain profile. 218 275 IPR001471 GO:0003700|GO:0006355
Pumo8g01971 478 PRINTS Ethylene responsive element binding protein signature 219 230 IPR001471 GO:0003700|GO:0006355
Pumo8g01971 478 PRINTS Ethylene responsive element binding protein signature 257 277 IPR001471 GO:0003700|GO:0006355
Pumo8g01971 478 MobiDBLite consensus disorder prediction 107 126 - -
Pumo8g01971 478 CDD AP2 126 183 IPR001471 GO:0003700|GO:0006355
Pumo8g01971 478 CDD AP2 217 277 IPR001471 GO:0003700|GO:0006355
Pumo8g01971 478 SMART rav1_2 126 188 IPR001471 GO:0003700|GO:0006355
Pumo8g01971 478 SMART rav1_2 218 281 IPR001471 GO:0003700|GO:0006355
Pumo8g01971 478 SUPERFAMILY DNA-binding domain 125 183 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01971 Pumo-Chr8 56342665 56346797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01971 19 311 AP2-EREBP Transcription Factor Family AT4G36920 71.242 6.01e-131 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pumo8g01971 AP2 3.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01971 K09284 - gmx:100786333 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01971 8 56342665 56346797 Pumo8g01971 8 56342665 56346797 ECH
Pumo8g01971 8 56342665 56346797 Pumo4g01942 4 26322486 26329002 PCT