Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01964 ATGGGTGACATGTACCACTTTGACAAGAACCTCTCTTCGCAAGACGAAATCTCACTTTTTCTGCGTCAGATTCTGCTCCGTTCATCTTCTTCTTCCCACTCCATGCCTGGATCCTGCAGCTCCAACGCTGCTCACCAAAACGTAAATGCACACACTTCTTTCACAGCGTCACCGCTCCAAGATGGGAAGATCTCGGCCGTTGATTCCACCGCTTCTTTTGTCTCGGGTTCTGGTGCTTGCAGTTCCTTCAAGGCTCAGGGTGCTTCTGCTGCAAATGTGTCTTCTTCTTCTCTTGGACTGAGTGAGAACGAGAATGATGACTATGATTGTGAAAGTGAGGAGGGTGTTGAGGCTTTGGCCGAAGAGGTTCCAACAAAGCCTGCTCCTTCTAGGAGTTCATCTAAAAGATCAAGAGCTGCAGAAGTTCATAATTTGTCTGAGAAGCGAAGAAGGAGTAGGATCAACGAGAAAATGAAGGCTTTGCAAAATCTAATTCCAAATTCTAACAAGACGGATAAGGCTTCAATGCTTGACGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGGTTGAGCTTGCATCCTATGTGCTTTCCTGAAGGCTTGCAGCAGCCTCTGCAGTTGTCTCAGATGAGTATGGAATTAAGTGAAAGAAGCAGGTCTACCCCTTTAAACATGTCAGCTACTCTGCCTCTGCACCAAGACAACCCCTTGCACTTTGCATCCAATCTACCTAACAAACACACTCTGCCAAATCAGCCATCTGTGCCCTATCCTCCATACATTAACAACTCAGAAACTTCTTTCGGACTGGAATCCCGAATCCAACCAGATATGAAACCTCTTCAACACAAAGGAGGATCTTCTGAGCCAATACGCGGGCAAGACATTTTGCAATACCAGCAATCAAGTGCTATCCATTCAGATACCAATACATTAGGTGGTTCTCAAGTTGTCAAAGAATTCGAGTCAGGCACGACATTATCATTCCCTTTTGACACGCAAGCATGTGAACCTAAGGACAACAACTCTTTGCAACCATGCATTGGCGGAAGAAATAGTGAGGCCAACATTGTTGTTACATCACAGCTAAGTAGGTAA 1128 0.4512 MGDMYHFDKNLSSQDEISLFLRQILLRSSSSSHSMPGSCSSNAAHQNVNAHTSFTASPLQDGKISAVDSTASFVSGSGACSSFKAQGASAANVSSSSLGLSENENDDYDCESEEGVEALAEEVPTKPAPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMCFPEGLQQPLQLSQMSMELSERSRSTPLNMSATLPLHQDNPLHFASNLPNKHTLPNQPSVPYPPYINNSETSFGLESRIQPDMKPLQHKGGSSEPIRGQDILQYQQSSAIHSDTNTLGGSQVVKEFESGTTLSFPFDTQACEPKDNNSLQPCIGGRNSEANIVVTSQLSR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01964 375 MobiDBLite consensus disorder prediction 94 150 - -
Pumo8g01964 375 MobiDBLite consensus disorder prediction 136 150 - -
Pumo8g01964 375 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
Pumo8g01964 375 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 316 IPR031066 -
Pumo8g01964 375 Pfam Helix-loop-helix DNA-binding domain 142 188 IPR011598 GO:0046983
Pumo8g01964 375 Gene3D - 133 197 IPR036638 GO:0046983
Pumo8g01964 375 CDD bHLH_AtPIF_like 139 200 IPR047265 -
Pumo8g01964 375 Coils Coil 177 197 - -
Pumo8g01964 375 FunFam Basic helix-loop-helix transcription factor 133 196 - -
Pumo8g01964 375 MobiDBLite consensus disorder prediction 104 118 - -
Pumo8g01964 375 SMART finulus 144 193 IPR011598 GO:0046983
Pumo8g01964 375 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 198 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01964 Pumo-Chr8 56237761 56241252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01964 5 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 50.410 1.03e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo8g01964 HLH 4.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01964 - - gmx:100793754 562.377