Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01962 ATGGCTTCAGAGTGGAGGAGACCTGGAAGGCTGACCCATTTTACTGTTGTTCGTAAACTTGATGGGAGTATATTTCCGATGGGGTTCAACAAGGAGGTTACGGACAGAAACTTACAAGCTGGTTCAAATATTCTGTGTGCTGAAAGCAGTGAAAGAGCTTTGTTGAACCGCTTGATGTTAGAATTACACAAGTTGGATAGCGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGATGTTCTTCTCCACAGATCTCAGGCTTGCAAAGTAGCAAGCAGCATGTGGTCTAAATTAGGCCGCCTCAACCGTTCTACAATGCCTAAACTTAGAAGAAGCAAGGTTTTTGGTTCTGGAGCAGATCCTGGTATCATGTCCTGCATTGCTGGTCGGCTTCTTTGTGATACATACTTGTGTTCCCGTGACCTATTAAAGGAGGTTAGTTATTCTTTAACTCACCTTGCAAAATCACATCTAAACAAGTTTCGGAAGGAAGTTGCTCCACATGAAGTTCCAAAAATGTTCCAAACAGCAGAATCCCTACTGGAGCTTATTGAATACGGTGAAACAGATGCATGGTTGTCTATGGAACTCATGTTTTATTTAAGTATTCTTCCGCTCACACGTCAGCTGACTAATATAAGTGGTAATCTGTGGGGGAAAACTCTTCAGATATTGATGATGCAAACTACTGACAACGATGCTTCTGAAGCTGATAATAAGAAAAGCAAAAAGGGTCCTTCTTATGCCGGGGGACTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAATATATATTGCTTCTGGACTTCAACAGTCTTTATCCTTCTATTATTCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATCTTTGGATGGATCTTTTCCTCGTCTACCATCTAGCAAAACAACTGGAGTCTTGCCAGAGGTGCTGAAAAATCTGGTCGATCGGAGGAAAATGGTAAAGTCGTGGATAAAGAATGAAAAAAAGAATCCTATTAGAGTTCAGCAACTGGATATTCAGCAGCAAGCACTGAAGCTTACTGCAAATAGTATGTATGGGTGCCTGGGATTTTCCAATTCAAGATTTTATGCTAAGCCGTTAGCTGAGCTTATAACTTCACAAGGAAGGGAGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAGGTGATCTATGGTGATACTGATTCAATAATGATTTACAGTGGGCTAGATGATATTGAGCAAGCTAATAAAATTGCTGTAAGAGTTATTCAAGAGGTCAATAAGAAGTATAAATGCTTGGAAATTGATCTTGATGGTTTATATAAAAGGATGCTTCTTCTTAAGAAAAAGAAGTATGCAGCTGTAAAGTTGCTGTTTAAAGATGGTGCCCCATATGAGGTTATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTATTAGCTAAAGAACTAGGAGATTTTTGCTTGACTCAAATTTTGTCAGGAGGGTCATGTGAAGATGTCGTGGAGTCAATCCACAACTCGCTAATGAAGGTACAAGAAGAAATGAGGAACGGACAAGTACCATTAGAGAAATATGTCATTACAAAGACATTGACTAAACCTCCTGAAGCTTATCCTGATGCCAAGAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTTACTCTTCTGGTTGCTCTGTTGGTGATACAATCCCTTATATAATTTGCTATGAGCAGGGTGGTAGTTCAGGCAGTGCAGCTGGCATTGCTCAACGTGCCAGACATCCTGATGAACTTAAACGAGAACAAGGGACATGGCTGATTGACATTGATTACTATTTATTACAACAGATCCATCCTGTGGTATCACGTCTTTGTGCATCAATTCAGGGCACAAGCCCAGAAAGACTGGCTGATTGTTTAGGGCTTGACTCATCAAAGTTTCATCATAAATCAAGTGAAGCTTTAAATGATGATTCTACAAGCCCATTCTCGTCTGTTGCTGATGATGAGGAGAGGTATCGGGGATGTGAGCCGTTGGTCTTGTCATGCCCCGGCTGCTCTGGTACATTTGACTGCCCACCCGTCTTTAAATCTATTTGTTTGTTGGGAAGTGAAAAGTCAACCACCGCGGAGGAAGCTGACTACAATTTCTGGCGTAAGCTGTGCTGTCCTAAATGCCCAGAAGATGTTAAAATTTCTCCTGCAATGATAGCTAATCAGGTCAAAAGGCAAGCAGAGAGGTTTGTTTTAATGTACTATAGAGGTTTACTAGTGTGTGATGATGAAACGTGTAAGCATACAACGCGAAGTATCAGCCTTCGGTTGGTTGGTGATTCAGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAGTTCACTGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTCGATACTGTTTCTTGTATAGAAAAGATGGAAGGCAAAATCCAGAATACCGATAGAGAAAGAGTTGATGAAAATTAG 2535 0.4079 MASEWRRPGRLTHFTVVRKLDGSIFPMGFNKEVTDRNLQAGSNILCAESSERALLNRLMLELHKLDSDVLVGHNISGFDLDVLLHRSQACKVASSMWSKLGRLNRSTMPKLRRSKVFGSGADPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTHLAKSHLNKFRKEVAPHEVPKMFQTAESLLELIEYGETDAWLSMELMFYLSILPLTRQLTNISGNLWGKTLQILMMQTTDNDASEADNKKSKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSLDGSFPRLPSSKTTGVLPEVLKNLVDRRKMVKSWIKNEKKNPIRVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIEQANKIAVRVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLLFKDGAPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQVPLEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICYEQGGSSGSAAGIAQRARHPDELKREQGTWLIDIDYYLLQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFHHKSSEALNDDSTSPFSSVADDEERYRGCEPLVLSCPGCSGTFDCPPVFKSICLLGSEKSTTAEEADYNFWRKLCCPKCPEDVKISPAMIANQVKRQAERFVLMYYRGLLVCDDETCKHTTRSISLRLVGDSERGTVCPNYPRCNGRLVRKFTEADLYKQLSYFCHVFDTVSCIEKMEGKIQNTDRERVDEN 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01962 844 SMART polmehr3 6 412 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pumo8g01962 844 ProSitePatterns DNA polymerase family B signature. 400 408 IPR017964 GO:0000166|GO:0003676
Pumo8g01962 844 Gene3D Palm domain of DNA polymerase 208 382 IPR023211 -
Pumo8g01962 844 Gene3D DNA Polymerase alpha, zinc finger 665 844 IPR038256 -
Pumo8g01962 844 Pfam DNA polymerase family B 240 632 IPR006134 GO:0000166|GO:0003677
Pumo8g01962 844 SUPERFAMILY Ribonuclease H-like 13 224 IPR012337 -
Pumo8g01962 844 Gene3D - 476 663 IPR042087 -
Pumo8g01962 844 CDD DNA_polB_alpha_exo 13 211 - -
Pumo8g01962 844 FunFam DNA polymerase 476 662 - -
Pumo8g01962 844 FunFam DNA polymerase 671 841 - -
Pumo8g01962 844 CDD POLBc_alpha 243 648 IPR045846 GO:0003887|GO:1902975
Pumo8g01962 844 Gene3D Palm domain of DNA polymerase 246 459 IPR023211 -
Pumo8g01962 844 Pfam DNA Polymerase alpha zinc finger 672 837 IPR015088 GO:0003887|GO:0006260
Pumo8g01962 844 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 232 836 - -
Pumo8g01962 844 SUPERFAMILY DNA/RNA polymerases 241 648 IPR043502 -
Pumo8g01962 844 FunFam DNA polymerase 1 232 - -
Pumo8g01962 844 Coils Coil 412 446 - -
Pumo8g01962 844 PRINTS DNA-directed DNA-polymerase family B signature 267 280 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pumo8g01962 844 PRINTS DNA-directed DNA-polymerase family B signature 345 357 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pumo8g01962 844 PRINTS DNA-directed DNA-polymerase family B signature 398 406 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pumo8g01962 844 NCBIfam DNA polymerase (pol2) 12 630 - -
Pumo8g01962 844 Pfam DNA polymerase family B, exonuclease domain 29 153 IPR006133 -
Pumo8g01962 844 Gene3D - 3 204 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01962 Pumo-Chr8 56217161 56227161 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01962 2 830 Core DNA Replication Machinery Family AT5G67100 66.027 0.0 1184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01962 K02320 - gmx:100798779 1527.69