Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01959 ATGCCGGATCACTCCACCACCACCGGCGCCGCAATGAACGACCAGCTCTCGAACCCGACCTCCATCTTCGGCCTCCGTCTATGGGTGGTCCTGGGCGTGTGCGTGGGCGCCGCCATCGTCCTCATCCTCTTCCTCATCTCCGTCTGGCTCGCCTTCAAGCGCTCCAAAACCAACCCCGTCTCCATCCCCGACGTCTCCAAGGAGATCCAAGAAATCAGGCTCGACCACGCCCCCAATCCCCAGCCCGACCCTTTCCCCGAACCTGACCCCCTTCCTCTCACCGAAGACCACAGAATCCAGTTCGAGATTGGGAAGAACCACCGAATCTCGTACCCGGAACGTGCCTTGGTTCGGTCCAGCTCCAATGACCCCAGCAGCGGCGAGGCTGCCAGGCCCCTCGATCAGGTTCCCACCGTCATTCCAGAAGTTTCTCACTTGGGTTGGGGCCACTGGTACACTCTCAGGGAGCTCGAGGATTCCACTAACGGCTTCGCTCCCGACAATGTTATTGGCCAAGGTGGATACGGAATTGTTTATCACGGTATCTTGAACGACAACACTAATGTTGCTATTAAAAATTTGCTCAATAATAGGGGCCAAGCTGAGAAGGAATTTAAGATTGAAGTGGAAGCTATAGGACGTGTTCGCCACAAGAATTTAGTGAGGTTGCTTGGTTATTGTGCCGAAGGAGCTCATAGAATGCTTGTTTATGAGTACGTTGACAATGGTAATTTAGAGCAGTGGCTACATGGGGATGTTGGACCTTGCAGCCCTCTAACTTGGGAAATTCGAATGAACATTATTCTGGGAACGGCTAAAGGGTTAACTTATCTTCATGAGGGGTTGGAACCAAAAGTTGTTCACCGTGATATTAAATCAAGCAACATTTTGCTCAGTAAGCAGTGGAATGCAAAGGTGTCAGACTTTGGCCTCGCCAAACTCCTTGGCTCTGACAACAGCTATATTACAACCCGTGTCATGGGTACATTTGGATATGTTGCTCCTGAATACGCGAGTACTGGAATGTTGAATGAACGGAGCGATGTTTATAGTTTTGGAATTCTTATTATGGAAGTAATTACAGGAAGGAATCCAGTTGATTATAGTCTGCCTCAAGAAGAGGTGAATTTAGTGGACTGGCTCAAGAAGATGGTTAGCAACAGAAATCCAGATGGGGTGCTGGATCCCAAGCTTCCTGAGAAACCAACCTCAAGGGCACTAAAACGAGCCCTTCTTGTAGCCTTACGCTGCACTGATCCTAATGCACAAAAGCGGCCTAAAATGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAGGATCGCAGAGCAAGAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGGGATGGGTTGAAAGAGGAGGCAACTGTATCAGTTGATGATGGTAAGCTTGAAAATGGGATGTGTGCCAATGAGACAAGATCGAACCCTCAAATAGAAAAGCAATAA 1488 0.4913 MPDHSTTTGAAMNDQLSNPTSIFGLRLWVVLGVCVGAAIVLILFLISVWLAFKRSKTNPVSIPDVSKEIQEIRLDHAPNPQPDPFPEPDPLPLTEDHRIQFEIGKNHRISYPERALVRSSSNDPSSGEAARPLDQVPTVIPEVSHLGWGHWYTLRELEDSTNGFAPDNVIGQGGYGIVYHGILNDNTNVAIKNLLNNRGQAEKEFKIEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGDVGPCSPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLSKQWNAKVSDFGLAKLLGSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVITGRNPVDYSLPQEEVNLVDWLKKMVSNRNPDGVLDPKLPEKPTSRALKRALLVALRCTDPNAQKRPKMGHVIHMLEAEDSPYKEDRRARRDAGHSPNDRVGDGLKEEATVSVDDGKLENGMCANETRSNPQIEKQ 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01959 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
Pumo8g01959 495 ProSitePatterns Protein kinases ATP-binding region signature. 170 192 IPR017441 GO:0005524
Pumo8g01959 495 FunFam Probable serine/threonine-protein kinase At1g01540 144 239 - -
Pumo8g01959 495 PANTHER OS01G0323000 PROTEIN 11 451 - -
Pumo8g01959 495 ProSiteProfiles Protein kinase domain profile. 164 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01959 495 Pfam Protein kinase domain 167 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01959 495 Gene3D Phosphorylase Kinase; domain 1 144 239 - -
Pumo8g01959 495 Gene3D Transferase(Phosphotransferase) domain 1 240 452 - -
Pumo8g01959 495 CDD STKc_IRAK 170 436 - -
Pumo8g01959 495 MobiDBLite consensus disorder prediction 429 473 - -
Pumo8g01959 495 FunFam Putative receptor-like serine/threonine-protein kinase 240 450 - -
Pumo8g01959 495 Coils Coil 184 204 - -
Pumo8g01959 495 SMART serkin_6 164 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01959 495 MobiDBLite consensus disorder prediction 424 495 - -
Pumo8g01959 495 SUPERFAMILY Protein kinase-like (PK-like) 140 436 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01959 Pumo-Chr8 56206487 56209385 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01959 18 431 Trihelix Transcription Factor Family AT1G68690 39.953 1.02e-87 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Pumo8g01959 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01959 - - gmx:100797726 897.501