LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo8g01959	ATGCCGGATCACTCCACCACCACCGGCGCCGCAATGAACGACCAGCTCTCGAACCCGACCTCCATCTTCGGCCTCCGTCTATGGGTGGTCCTGGGCGTGTGCGTGGGCGCCGCCATCGTCCTCATCCTCTTCCTCATCTCCGTCTGGCTCGCCTTCAAGCGCTCCAAAACCAACCCCGTCTCCATCCCCGACGTCTCCAAGGAGATCCAAGAAATCAGGCTCGACCACGCCCCCAATCCCCAGCCCGACCCTTTCCCCGAACCTGACCCCCTTCCTCTCACCGAAGACCACAGAATCCAGTTCGAGATTGGGAAGAACCACCGAATCTCGTACCCGGAACGTGCCTTGGTTCGGTCCAGCTCCAATGACCCCAGCAGCGGCGAGGCTGCCAGGCCCCTCGATCAGGTTCCCACCGTCATTCCAGAAGTTTCTCACTTGGGTTGGGGCCACTGGTACACTCTCAGGGAGCTCGAGGATTCCACTAACGGCTTCGCTCCCGACAATGTTATTGGCCAAGGTGGATACGGAATTGTTTATCACGGTATCTTGAACGACAACACTAATGTTGCTATTAAAAATTTGCTCAATAATAGGGGCCAAGCTGAGAAGGAATTTAAGATTGAAGTGGAAGCTATAGGACGTGTTCGCCACAAGAATTTAGTGAGGTTGCTTGGTTATTGTGCCGAAGGAGCTCATAGAATGCTTGTTTATGAGTACGTTGACAATGGTAATTTAGAGCAGTGGCTACATGGGGATGTTGGACCTTGCAGCCCTCTAACTTGGGAAATTCGAATGAACATTATTCTGGGAACGGCTAAAGGGTTAACTTATCTTCATGAGGGGTTGGAACCAAAAGTTGTTCACCGTGATATTAAATCAAGCAACATTTTGCTCAGTAAGCAGTGGAATGCAAAGGTGTCAGACTTTGGCCTCGCCAAACTCCTTGGCTCTGACAACAGCTATATTACAACCCGTGTCATGGGTACATTTGGATATGTTGCTCCTGAATACGCGAGTACTGGAATGTTGAATGAACGGAGCGATGTTTATAGTTTTGGAATTCTTATTATGGAAGTAATTACAGGAAGGAATCCAGTTGATTATAGTCTGCCTCAAGAAGAGGTGAATTTAGTGGACTGGCTCAAGAAGATGGTTAGCAACAGAAATCCAGATGGGGTGCTGGATCCCAAGCTTCCTGAGAAACCAACCTCAAGGGCACTAAAACGAGCCCTTCTTGTAGCCTTACGCTGCACTGATCCTAATGCACAAAAGCGGCCTAAAATGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAGGATCGCAGAGCAAGAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGGGATGGGTTGAAAGAGGAGGCAACTGTATCAGTTGATGATGGTAAGCTTGAAAATGGGATGTGTGCCAATGAGACAAGATCGAACCCTCAAATAGAAAAGCAATAA	1488	0.4913	MPDHSTTTGAAMNDQLSNPTSIFGLRLWVVLGVCVGAAIVLILFLISVWLAFKRSKTNPVSIPDVSKEIQEIRLDHAPNPQPDPFPEPDPLPLTEDHRIQFEIGKNHRISYPERALVRSSSNDPSSGEAARPLDQVPTVIPEVSHLGWGHWYTLRELEDSTNGFAPDNVIGQGGYGIVYHGILNDNTNVAIKNLLNNRGQAEKEFKIEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGDVGPCSPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLSKQWNAKVSDFGLAKLLGSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVITGRNPVDYSLPQEEVNLVDWLKKMVSNRNPDGVLDPKLPEKPTSRALKRALLVALRCTDPNAQKRPKMGHVIHMLEAEDSPYKEDRRARRDAGHSPNDRVGDGLKEEATVSVDDGKLENGMCANETRSNPQIEKQ	495

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pumo8g01959	495	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	286	298	IPR008271	GO:0004672\|GO:0006468
Pumo8g01959	495	ProSitePatterns	Protein kinases ATP-binding region signature.	170	192	IPR017441	GO:0005524
Pumo8g01959	495	FunFam	Probable serine/threonine-protein kinase At1g01540	144	239	-	-
Pumo8g01959	495	PANTHER	OS01G0323000 PROTEIN	11	451	-	-
Pumo8g01959	495	ProSiteProfiles	Protein kinase domain profile.	164	443	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pumo8g01959	495	Pfam	Protein kinase domain	167	432	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pumo8g01959	495	Gene3D	Phosphorylase Kinase; domain 1	144	239	-	-
Pumo8g01959	495	Gene3D	Transferase(Phosphotransferase) domain 1	240	452	-	-
Pumo8g01959	495	CDD	STKc_IRAK	170	436	-	-
Pumo8g01959	495	MobiDBLite	consensus disorder prediction	429	473	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo8g01959	Pumo-Chr8	56206487	56209385	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo8g01959	18	431	Trihelix Transcription Factor Family	AT1G68690	39.953	1.02e-87	281

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-V	Pumo8g01959		Pkinase	1.2e-46	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo8g01959	-		-	gmx:100797726	897.501

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