Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01956 ATGAATTGGGTTCGCGGAGACTCTCTCGGCAGTGGCAGTTTCGCCACCGTTAACATAGCAATACCCACAAACGCTTTCACTCCCATTGCCGTCAAATCTTGTGATCTCCACACTTCGATGATGCTGAAAAACGAGAAGGAAATACTCGATTGCCTTGGAGCTTCCCCTTTCATCATCAACTGTTTCGGCCACGATCACACTGTTGAAGACGGAGAAGAGTACTACAACATCTTTCTTGAATACGCCGCCGGTGGTTCTCTCGCCGATCAGGTCAAAAACCAAGGCGGGAGCCTCCCGGAGCCTTACGTTCGGCGCTGTACGAGGTCGATCGTCGAAGGTTTAAAACATATTCACGACAACGGTTATGTTCACTGCGATGTGAAGCTTCAGAACATTCTCGTTTTCGAGAATGGGGATGTTAAGATCGCGGACTTTGGGCTCGCGAAGGAGAAAGGGGAGAAACAGGGGAAGTGGGAGTGCAGGGGGACGCCGCTGTTTATGTCGCCGGAATCGGTGAACGACAATGAGTACGAGTCGCCGGCGGATATATGGGCCCTGGGCTGCGCCGTCGTGGAGATGGTGACCGGAAAACCCGCGTGGGATCTTGGCGGGTCGAATATATGGTCCTTGTTGATTCGAATTGGAGTGGGAGAAGAATTGCCGAAGATTCCAGAAGAGTTATCAGAAGAGGGCAAGGATTTTCTGTTGAAGTGTTTCGTTAAGGATCCTACGAAGAGGTGGAGCGCTGAGATGCTTTTGAACCACCCTTTCATCAACGGTGAAACTGTGTCGTTTCAGAAAGTTAATGAGCCGTTACGGATAACGTCGCCGTCACCGAGGACTCACTTTGATTTCCCTCACTGGGCTTCCACCGTAACGGCTTCGCTTCCGAGTTCCCCGGATTCCGACGAGTGGCGTGTGTGGGAATTCGGGTCGTCGTGTTCGCCGGAGAATCGGCTCTGGCGGCTGGTCACCGATCAGATGCCGGCGAATTGGTCAGAATCGGATGGCTGGACTAGCGTTAGGTGA 1029 0.5248 MNWVRGDSLGSGSFATVNIAIPTNAFTPIAVKSCDLHTSMMLKNEKEILDCLGASPFIINCFGHDHTVEDGEEYYNIFLEYAAGGSLADQVKNQGGSLPEPYVRRCTRSIVEGLKHIHDNGYVHCDVKLQNILVFENGDVKIADFGLAKEKGEKQGKWECRGTPLFMSPESVNDNEYESPADIWALGCAVVEMVTGKPAWDLGGSNIWSLLIRIGVGEELPKIPEELSEEGKDFLLKCFVKDPTKRWSAEMLLNHPFINGETVSFQKVNEPLRITSPSPRTHFDFPHWASTVTASLPSSPDSDEWRVWEFGSSCSPENRLWRLVTDQMPANWSESDGWTSVR 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01956 342 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 299 - -
Pumo8g01956 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Pumo8g01956 342 Pfam Protein kinase domain 5 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01956 342 SMART serkin_6 3 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01956 342 CDD STKc_MAPKKK 2 258 - -
Pumo8g01956 342 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Pumo8g01956 342 ProSiteProfiles Protein kinase domain profile. 3 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01956 342 SUPERFAMILY Protein kinase-like (PK-like) 3 300 IPR011009 -
Pumo8g01956 342 Gene3D Transferase(Phosphotransferase) domain 1 2 292 - -
Pumo8g01956 342 FunFam Mitogen-activated protein kinase kinase kinase 17 2 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01956 Pumo-Chr8 56167106 56168293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01956 1 342 MAP Kinase Kinase Kinase AT4G36950 52.707 5.72e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Pumo8g01956 Pkinase 2.1e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01956 - - gmx:100799550 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01956 8 56167106 56168293 Pumo8g01956 8 56167106 56168293 ECH
Pumo8g01956 8 56167106 56168293 Pumo4g01961 4 26677486 26677809 PCT