Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01954 ATGGACGTGGACATACTCAAAACTTGTACGAGTGACAGCAGCATGGACATGATGATGATGATGATGATGCAAATGGAAAAGTTCCCTGAATTATGTGAACCTTTTTATAACAACAACACTAGTACTACTCTTCTCTACCCAGAAAACGAGTTCTTAAGCTCATCCACCACCACTCTACCCGTCTTCTCCAACGTTATAACTCCACCACCACCTCCTTCTTCTTCCACCAATTTCGTTCTACAACAACCCATGACACCTCCTCTTGAACCCAGCCCTTCGTTTTCGGAGAAGAAGAATTCTGTGGCAGCTATGAGGGAGATGATTTTCCGCGTAGCGGTTATGCAACCTGTTCATATAGACCCTGAATCCATCAAGCCACCGAAGAGAAGGAACGTGAAGATTTCAAAGGATCCGCAGAGCGTGGCGGCGAGGCACAGAAGAGAAAGGATAAGCGAGAGAATAAGGATCCTTCAGAGATTAGTTCCAGGTGGGACCAAAATGGACACGGCTTCTATGTTGGATGAGGCCATACACTACGTGAAGTTCTTGAAGAAACAAGTGCAGACGCTGGAACAAGCAGGGGCAACTAGACCCTTGAATGTTGTTGGCTACCCTACTACTGTCTCCAACGCCAATAATAATAACAATGTAAATTATTCTGGTTTTCTGAGGAGTTGCCAACCTTATCCAATGCTGGGTTCTGCAGCTTCTAAACAAATGCTCAGTTGA 729 0.4513 MDVDILKTCTSDSSMDMMMMMMMQMEKFPELCEPFYNNNTSTTLLYPENEFLSSSTTTLPVFSNVITPPPPPSSSTNFVLQQPMTPPLEPSPSFSEKKNSVAAMREMIFRVAVMQPVHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGATRPLNVVGYPTTVSNANNNNNVNYSGFLRSCQPYPMLGSAASKQMLS 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01954 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 193 IPR036638 GO:0046983
Pumo8g01954 242 Pfam Helix-loop-helix DNA-binding domain 144 183 IPR011598 GO:0046983
Pumo8g01954 242 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 55 220 IPR045843 GO:0003700|GO:0006355
Pumo8g01954 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 183 IPR011598 GO:0046983
Pumo8g01954 242 CDD bHLH_AtIND_like 135 191 - -
Pumo8g01954 242 Gene3D - 133 199 IPR036638 GO:0046983
Pumo8g01954 242 Coils Coil 173 193 - -
Pumo8g01954 242 SMART finulus 140 189 IPR011598 GO:0046983
Pumo8g01954 242 FunFam BHLH transcription factor 137 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01954 Pumo-Chr8 56138366 56139094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01954 12 192 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 58.763 3.46e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo8g01954 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01954 - - gmx:100796649 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01954 8 56138366 56139094 Pumo8g01954 8 56138366 56139094 ECH